Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00911 ATGAGGAATTGGTGTTGCTCATGCTTTATTGCGGGAGAAGACGAAGTGGAAGAGGAACGATTTAGAGAGATCGCGATGAGGGAGGGTGTCGAAAACGAGGGAAATCCCGAGAATATTGTTGGTAATGACGATGAATTCGAAGATGTTAGTAGATTAGGGCTTGCTGTTGACAGGCCCGCGCCTGATGACCAAGTTCAGTTGAGATTGTTTGAGGAGATGGTTAGAGCAGCGCGAAATCATTGTGAAGTGGGATTAAGTTCCCATGTCCTTAACCCATGGAAGTTTCAGTTTTGGGTTTCGAGTCAAGCTGAGGGTGAAAGCAGTAACAGTTCGGCTCCAGTCTCAGCAATTCGGGTGGGAGGAAATGGCAACGAAGAGTGTGATCTTGATCCTCACCACAAGCGTGCCAAAGTTCACTCTGATTCTTGTGTGTGCTCCTATTCTCCCACATTTCCTTCAGATGCTGGAAACACTTCGTGCATGGAGTTGAATCTTGATATTAGGCATGGATCACTAGTTACATCTAAAAATGAGAGTGTATATCAAACCATTACATTGATTAATGCCGGTGGTGGCTTTCCTTTCGGCTCCAGCAGTGGGAAAGATGAGATTAAGGGCATTAAAACAGAGGATTTTGAAATTCGGATGGATCTCACAGACGACCTATTGCATATGGTTTTCTCTTTCTTGGACCACATAAATCTTTGTCGAGCTGCCATTGTATGTAGGCAATGGAGAGTGGCTAGTGCTCATGAAGATTTCTGGAGATGTTTGGATTTTGAGAATAGAAACATATCTGTTGACCAATTTGAGGACATGTGTCAGCGATACCCCAAGGCGACAGAAGTTAATATATCTGGTGCTCCTGATATTCACTTGCTTGTTATGAAGGCAGTAGCTTCATTGAGAAATCTGGAAATCTTAACTTTGGGAAGAGGTCTATTGGGGGACACATTTTTTCATGCCTTAGCAGATTGTCAGACATTGAAGAAGTTGACTGTTAATGATTCTACTCTTGGTAATGGTATTCAAGAAATACCTATAAACCATGATCGTTTGCGTCATCTTTATTTGACAAAATGTCGTGTCATACGCATATCTGTCAGGTGCCCACAACTTGAGACATTGTCTTTGAAACGAAGCAACATGGCACAAGCTATACTCAATTGCCCTCTTCTGCGCGATTTAGATATAGGCTCTTGCCACAAGCTTTCTGACGCTGCAATTCGTTCAGCTGCAACATCATGTCCTCAGTTAGACTCTCTGGACGTGTCAAATTGTTCGTGTATTAGTGATGAAACAATACATGAAATAGCTAGCACTTGTGCAAATCTCCATATTTTAAATGCTTCATACTGCCCTAATATATCTCTGGAGTCTGTTGCGCTGGCAATGTTGACAGTTCTTAAGCTTCATAGCTGTGAGGGTATTACTTCAGCATCAATGTTAGCAATATCTCGTTGTTCTATGCTTGAGGTTTTAGAGCTTGACAATTGCAGCCTTTTAACCTCTGTGTCCTTGGATCTCCAACGCTTGCAGAGTATTCGTCTGGTTCATTGTCGCAAATTTGCTGATCTAAATTTACGGAGTCTAGTGCTATCGTCCATCATGGTGTCTAATTGTCCTGCCCTTCACCGCGTCAACATCACATCCAATGCACTTCAAAAATTAGCATTGCAGAACCTAGAAAACTTAACCACCTTGGCCTTGCAATGCCAAAGTTTACAGGAAGTAGACCTCACTGACTGTGAATCTCTCTGGAATTCTATATGTGATATTTTTGGTGATGATGGCGGGTGCCCGATGCTGAAATCTTTAGTTCTTGATAACTGTGTGAGTTTGACAGCAGTCCGATTCTGCAGTACCTCCTTAGTTAATCTTTCTCTTGTTGGCTGTCGAGCCATCACCACTCTCCAGCTTACATGCCCCTTCCTCGAGAGAGTGTGTTTAGATGGATGTGATCATCTTGAAGTGGCGTCATTTTTTCCAGTTGGTCTAAAGTCACTTAATCTGGGTATATGTCCCAAATTGAATGAACTTAGAATTAAAGCCCCACATATGGCTATACTCGAGCTGAAAGGCTGTGGAGGGTTATCTGAAGCATCCATTGATTGTCCTCTGTTATCATCACTAGATGCTTCCTTTTGCAGCAAACTGAGGGATGACTGCTTGTCTGCAACGACTGCTTCGTGTCCGCTGATCGAGTCTTTAATATTGATGTCGTGTCCATCAGTTGGTTCAGATGGTCTGTACTCGTTGGGTCATCTTCCACGTTTAATCATTCTTGACTTATCGTATACATTTTTGATGAACTTGCATCCTGTCTTCGAGTCTTGTTTGCAACTTAAGGTGTTGAAGCTACAAGCGTGTAAGTACTTAACTGATTCATCACTGGAACCTCTTTACAAAGAAGGTGCTCTTCCAGCTTTGCAAGAGTTGGACTTATCTTATGGGACTTTCCGCCAGTCTTCTATAGAGGAGCTTCTTACTTGCTGCACCCATCTCACGCATGTTAGCCTGAATGGCTGTGTTAATATGCATGATCTGAATTGGAGCTACCATGACAGACTGTCGGAGTTGAATGGTTTAGATATATCATCTTGTCAGTTTTATGTCACAGATGTCATGGAGCCAACTGAGCAAGCAGATCGTTTACTGCAGAACCTCAACTGTGTTGGCTGTCCAAATATTAGGAAAGTTCTTATTCCTCCAACTGCGCGGTGTTCCCATCTGTCATCTCTGAACCTTTCTCTATCTTCCAATTTGAAAGAAGTTGATGTTGCTTGCTTGAATCTGTGCTTTCTCAACTTGAGGTTTGAATCTATCCCTGCTTGTGATTTGAAGTTTATCCTTGATTTCTGCGCCTATGAATTCCTCAATTTGTCTTTCAGCAACTGTTGCTCTTTGCAAGTTTTGAGATTGGACTGTCCAAAACTGAGTAGTCTCTTTCTTCAGTCTTGCAATATCGACGAAGAGGCTGTCGAAACTGCCATAGCCAAATGTAGCATGCTTGAGACCCTGGACGTCCGCTTCTGTCCGAAAATTTCCTCGATGAGCATGATTCAAATTCGGATGGCATGCTCGAGTTTGAAGCGGATCTTCAGCAGCCTCCTGTCTTCCTCATGA 3126 42.83 MRNWCCSCFIAGEDEVEEERFREIAMREGVENEGNPENIVGNDDEFEDVSRLGLAVDRPAPDDQVQLRLFEEMVRAARNHCEVGLSSHVLNPWKFQFWVSSQAEGESSNSSAPVSAIRVGGNGNEECDLDPHHKRAKVHSDSCVCSYSPTFPSDAGNTSCMELNLDIRHGSLVTSKNESVYQTITLINAGGGFPFGSSSGKDEIKGIKTEDFEIRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWRVASAHEDFWRCLDFENRNISVDQFEDMCQRYPKATEVNISGAPDIHLLVMKAVASLRNLEILTLGRGLLGDTFFHALADCQTLKKLTVNDSTLGNGIQEIPINHDRLRHLYLTKCRVIRISVRCPQLETLSLKRSNMAQAILNCPLLRDLDIGSCHKLSDAAIRSAATSCPQLDSLDVSNCSCISDETIHEIASTCANLHILNASYCPNISLESVALAMLTVLKLHSCEGITSASMLAISRCSMLEVLELDNCSLLTSVSLDLQRLQSIRLVHCRKFADLNLRSLVLSSIMVSNCPALHRVNITSNALQKLALQNLENLTTLALQCQSLQEVDLTDCESLWNSICDIFGDDGGCPMLKSLVLDNCVSLTAVRFCSTSLVNLSLVGCRAITTLQLTCPFLERVCLDGCDHLEVASFFPVGLKSLNLGICPKLNELRIKAPHMAILELKGCGGLSEASIDCPLLSSLDASFCSKLRDDCLSATTASCPLIESLILMSCPSVGSDGLYSLGHLPRLIILDLSYTFLMNLHPVFESCLQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYGTFRQSSIEELLTCCTHLTHVSLNGCVNMHDLNWSYHDRLSELNGLDISSCQFYVTDVMEPTEQADRLLQNLNCVGCPNIRKVLIPPTARCSHLSSLNLSLSSNLKEVDVACLNLCFLNLRFESIPACDLKFILDFCAYEFLNLSFSNCCSLQVLRLDCPKLSSLFLQSCNIDEEAVETAIAKCSMLETLDVRFCPKISSMSMIQIRMACSSLKRIFSSLLSSS 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8832035 8838184 - Bma001140.1 Bma01g00911 75428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00911 1041 Pfam F-box-like 220 260 IPR001810 GO:0005515
Bma01g00911 1041 Gene3D Ribonuclease Inhibitor 258 466 IPR032675 -
Bma01g00911 1041 Gene3D Ribonuclease Inhibitor 948 1034 IPR032675 -
Bma01g00911 1041 SMART LRR_CC_2 600 630 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 509 534 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 416 441 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 779 804 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 908 933 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 390 415 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 705 730 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 976 1000 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 1001 1026 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 642 667 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 463 488 IPR006553 -
Bma01g00911 1041 SMART LRR_CC_2 731 756 IPR006553 -
Bma01g00911 1041 SUPERFAMILY RNI-like 956 1032 - -
Bma01g00911 1041 PANTHER OS10G0396666 PROTEIN 125 1001 IPR044703 GO:0010252|GO:1905393
Bma01g00911 1041 SMART fbox_2 218 258 IPR001810 GO:0005515
Bma01g00911 1041 SUPERFAMILY RNI-like 568 798 - -
Bma01g00911 1041 SUPERFAMILY L domain-like 299 657 - -
Bma01g00911 1041 Gene3D Ribonuclease Inhibitor 767 947 IPR032675 -
Bma01g00911 1041 Gene3D Ribonuclease Inhibitor 467 618 IPR032675 -
Bma01g00911 1041 Gene3D Ribonuclease Inhibitor 659 766 IPR032675 -
Bma01g00911 1041 Gene3D - 211 257 - -
Bma01g00911 1041 PANTHER OS10G0396666 PROTEIN 125 1001 - -
Bma01g00911 1041 SUPERFAMILY F-box domain 216 287 IPR036047 GO:0005515
Bma01g00911 1041 SUPERFAMILY RNI-like 772 964 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00911 - - - qsu:111997858 1390.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00911 Bma02g00548 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00911 Bma-Chr1:8832035 Bma11g00852 Bma-Chr11:29235029 8.07E-06 dispersed
Bma01g00911 Bma-Chr1:8832035 Bma02g00548 Bma-Chr2:11090189 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00911 Bma_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0