Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma01g00927 | ATGTGCTCTTCCAATGAATCTCTTCCTTCTTCTCAGATTCTAATGGCTTCCAGATATCTTTCTGCAATCCAAGAAATTCTCTCTCAAACTGCTGGTTATTCGCCGGAAAATTTTGACCAACTGGGGTTCTCCACTTCTGCCATTGGATCTACACCACATCCTTCTTCTTTCCTTTCCATCAAGGGAATTTCTCAGCCGGATCATGAGCTCATCACCCATTCAGAAACTCAATTTGATCCTGCATTGCTCAGAACAGCCGATTTGAAGAAAATCCATCTTTTAACTCTCGTCCAATTGGTTGATGATCGATTCAATCAATGCTTGGACGAGATTCATCCTGTTATATCCGCCTTCAAGCCAATTACTGAGTTGGATCCAACTTCACACACCCATTTTGCTTTGCAGACATTGTCTTCTGTGTATAGGAATCTAAGGGAGAGAATCTGCAACTACGTCCTAGCCATGGAAGCTCATTCGAACCCATCATCATGCACCAAGGAGAAAGAAAGATCATTTGAGCAATCATTCTTCCAGAAACAGTGGGATATTCAGCAGCTAGAAAGAAAAGATCACCAGCTATGGAGGCCTCAGAGAGGCTTGCCGGAAAAATCAGTCTCCGTTCTACGCGCCTGGATGTTTCAAAATTTTCTCCATCCGTACCCTAAAGATGCAGAGAAGCATTTGCTTGCCGTAAAAAGTGGATTGACAAGAAGCCAGGTATCCAACTGGTTTATAAATGCTAGAGTCCGGTTATGGAAGCCGATGATCGAGGAAATGTATGCGGAGATGAACGGAAGAAAGTCGATCAATTGCTTAACCCAGTTGAGTATGAACCAGGACAGATTTTGTTAA | 852 | 42.96 | MCSSNESLPSSQILMASRYLSAIQEILSQTAGYSPENFDQLGFSTSAIGSTPHPSSFLSIKGISQPDHELITHSETQFDPALLRTADLKKIHLLTLVQLVDDRFNQCLDEIHPVISAFKPITELDPTSHTHFALQTLSSVYRNLRERICNYVLAMEAHSNPSSCTKEKERSFEQSFFQKQWDIQQLERKDHQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNGRKSINCLTQLSMNQDRFC | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9069693 | 9070914 | + | Bma001156.2 | Bma01g00927 | 75444 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma01g00927 | 283 | SMART | HOX_1 | 194 | 258 | IPR001356 | GO:0003677 | |
| Bma01g00927 | 283 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 7 | 270 | - | - | |
| Bma01g00927 | 283 | Gene3D | - | 188 | 269 | - | - | |
| Bma01g00927 | 283 | CDD | homeodomain | 194 | 255 | IPR001356 | GO:0003677 | |
| Bma01g00927 | 283 | SMART | prehox3 | 8 | 150 | IPR006563 | - | |
| Bma01g00927 | 283 | ProSiteProfiles | 'Homeobox' domain profile. | 191 | 254 | IPR001356 | GO:0003677 | |
| Bma01g00927 | 283 | Pfam | Homeobox KN domain | 211 | 250 | IPR008422 | GO:0003677|GO:0006355 | |
| Bma01g00927 | 283 | PANTHER | HOMEOBOX PROTEIN ATH1 | 7 | 270 | - | - | |
| Bma01g00927 | 283 | SUPERFAMILY | Homeodomain-like | 195 | 263 | IPR009057 | - | |
| Bma01g00927 | 283 | Pfam | Associated with HOX | 14 | 148 | IPR006563 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g00927 | Bma-Chr1:9069693 | Bma10g00129 | Bma-Chr10:1167298 | 5.90E-47 | dispersed | |
| Bma01g00927 | Bma-Chr1:9069693 | Bma04g00527 | Bma-Chr4:4641565 | 2.90E-48 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 56689 | PF07526 | POX | 8.40E-22 | No_clan | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma01g00927 | - | - | jre:109021085 | 340.117 |