Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00928 ATGGAGGGTGAGGAGAATGTACTGGAGGCCATTTATGAAGAGGTTAATGGGGAAGATGATGACGTGGATATGATTGATGTGGAAGGCGAGTTTGTGGATAAGGATTTGAACGGCATTTTAGAAAAGAGCAATGATACACATCCCAGTGTCTTGAACAAAGAATCTATGAGTAAAAATCGAAGGCGTCGGTCAAACAAGAAGAAAAACAAGAAAAAAAATAGTGGGGTTGGGACAAATGTGACAGATATAAACAGATTTGTGTTAGATTCATGTAAGCGACTAAAAGAGAAGAAATCATACATGGTATATACTGCTGTAGGTTGCCTGGGAATTTCTGCATTAAGTGATCTCATTAAAGAGGTAGTGGATGCTATTCAAGCTTGTGGCGGTCAGATGACTGCTGATGGCAGGCGCTCTCGAACAGGTGGTGGTGTTTTGTGGAACATAATAAAAGCACGAGAACCAAACGCATATAAGGAAATAATGCAAAAGGCAAAGGATTTTGAGAAATTATTTAGGCAGCCAAATGTGAGGCAATCTACACGTCCTGGAACGGAGTGTCCTAAAGAAGTTCCTCCACATGTATTTAGCGATCAGGCTCCTGCAGTTGCAGAAGTCTCTCCGCAAACTGCACTTGCAAACCAACACAAGCAGTCAGATTCTGAAGGGAAACGCGCACCTGTCCATGAAAGGTTAAGGGTACCTGTATCTTATGATGATAGTCTCCTTGAGGAGAATTTGAAGGATGATGCAATCGACTTAAGTTAG 768 41.8 MEGEENVLEAIYEEVNGEDDDVDMIDVEGEFVDKDLNGILEKSNDTHPSVLNKESMSKNRRRRSNKKKNKKKNSGVGTNVTDINRFVLDSCKRLKEKKSYMVYTAVGCLGISALSDLIKEVVDAIQACGGQMTADGRRSRTGGGVLWNIIKAREPNAYKEIMQKAKDFEKLFRQPNVRQSTRPGTECPKEVPPHVFSDQAPAVAEVSPQTALANQHKQSDSEGKRAPVHERLRVPVSYDDSLLEENLKDDAIDLS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9082037 9084851 - Bma001157.1 Bma01g00928 75445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00928 255 Gene3D - 78 175 IPR038092 -
Bma01g00928 255 Pfam Phosphorylated adapter RNA export protein, RNA-binding domain 89 166 IPR019385 -
Bma01g00928 255 MobiDBLite consensus disorder prediction 40 78 - -
Bma01g00928 255 MobiDBLite consensus disorder prediction 59 73 - -
Bma01g00928 255 PANTHER CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 1 242 IPR039047 GO:0006408
Bma01g00928 255 MobiDBLite consensus disorder prediction 177 235 - -
Bma01g00928 255 MobiDBLite consensus disorder prediction 218 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00928 K14291 PHAX; phosphorylated adapter RNA export protein - csv:101205280 263.462
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g54 . . . . Bpe02g01535 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00290 . . . . Bma01g00928 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008032 0 0 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00928 Bma_Chr01 FPKM 24.306784 26.859919 16.004339 16.966536 30.039654 30.962931 28.211912 26.382334 26.456161 27.90626