Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00959 ATGTCTAACTCAGCGATTGAGGTTCCTCCAAAGGGGGGGTTTAGTTTTGATCTCTGCAGAAGAAATGCTATGCTGGAAAAGAAGGGACTTCGTGGTCCGTCTTTTCTGAAGACAGGAACTACTATTGTTGGTTTGATCTTCAAGGATGGTGTTATTCTCGGAGCAGATACAAGAGCCACTGAAGGCCCTATAGTTGCTGATAAGAACTGCGAGAAAATTCATTACATGGCACCAAATATCTATTGCTGTGGAGCAGGAACAGCAGCTGATACAGAGGCAGTAACAGACATGGTGAGCTCACAGTTGCAATTGCACCGCTATCATACTGGTCGAGAATCAAGAGTTGTTACAGCCTTGACCCATCTAAAAAAGCACCTTTTTAGCTACCAAGGCTATGTTCAAGCTGCTTTGGTGCTTGGCGGGGTTGATATTACTGGACCTCATTTACATACGATATACCCCCATGGATCAACTGACACACTACCGTTTGCAACAATGGGTTCCGGGTCTCTAGCTGCAATGGCTGTTTTCGAGTCAAAGTATAAAGAAAGCCTGACTAAGGATGAGGGGATCCATCTTGTATCTGAGGCGATATGCTCTGGCATTTTCAATGACTTAGGAAGTGGAAGCAACGTCGACATCTGTGTGATAACCAAGGGACACAAAGAGTACCTAAGAAACCATATGTCGCCGAACCCTCATACTTATGTTAGTGCTAAAGGTTATTCCTTTTCGAAAAAGACCGAGATTCTCATGACAAAGGTAACATCTTTGAAGGAAAAAGTGGAAACTATTGAAGGAGGAGATGCAATGGAAGAGTAA 822 43.67 MSNSAIEVPPKGGFSFDLCRRNAMLEKKGLRGPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTHLKKHLFSYQGYVQAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYKESLTKDEGIHLVSEAICSGIFNDLGSGSNVDICVITKGHKEYLRNHMSPNPHTYVSAKGYSFSKKTEILMTKVTSLKEKVETIEGGDAMEE 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9425944 9428603 + Bma001184.1 Bma01g00959 75476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00959 273 Pfam Proteasome subunit 37 217 IPR001353 GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 167 178 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 178 189 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 47 62 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 PRINTS Proteasome component signature 203 214 IPR000243 GO:0004298|GO:0005839|GO:0051603
Bma01g00959 273 CDD proteasome_beta_type_7 40 228 - -
Bma01g00959 273 PANTHER PROTEASOME SUBUNIT BETA 21 233 - -
Bma01g00959 273 ProSitePatterns Proteasome beta-type subunits signature. 43 90 IPR016050 GO:0005839|GO:0051603
Bma01g00959 273 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 40 271 IPR029055 -
Bma01g00959 273 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 12 229 IPR029055 -
Bma01g00959 273 ProSiteProfiles Proteasome beta-type subunit profile. 39 217 IPR023333 -
Bma01g00959 273 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 21 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00959 K02739 PSMB7; 20S proteasome subunit beta 2 [EC:3.4.25.1] - jre:109010186 497.278
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02238 Bma01g00959 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00959 Bma-Chr1:9425944 Bma01g01322 Bma-Chr1:18134284 8.41E-29 dispersed
Bma01g00959 Bma-Chr1:9425944 Bma02g00375 Bma-Chr2:5912745 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g4 Blo01g01484 . . . . . . Bma01g02238 . . Cma01g01777 Cma05g00116 . Car12g00229 . Cpe07g00209 . . . . . . . . . . . . . . . Cone20ag1268 Cone17ag0142 Cone16ag0715 Cone2ag0316 . . . . . . . . . . Bma01g00959 . . . . . Cma12g00246 Car01g01370 Car05g00100 Cpe11g00096 Cpe02g00508 . . . . . . . . . . . . . . . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003205 1 2 1 2 1 2 2 1 2 1 2 2 2 1 2 2 2 2 2 2 2 1 1 1 1 2 1 6 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00959 Bma_Chr01 FPKM 4.975532 6.253689 5.759639 6.398563 5.586457 5.775891 5.433182 6.414727 5.456941 5.439083