Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00962 ATGGATTCTCCAGTTCAAGGAGTCTGTTCTTCCCCGGAAGTTCAGAATTCAACCTCTTTAAAACATCTGAAACATTCAGAATATAAAGCAGCCTCGTCAACATCTGATGTGGCTTCTCCTAGTAATGGCAAGACATTTTGCCACCTCAATGGTTCAGCAGCTAGTCGAAATCATCCTCGTAACCCTGCTCTTGAAGATTTGCAGCTCGTAGAATTGCTGGCAAGTAAGGAAGAATCGGAGTGTGTATGCGCGACCGGAACTCGCTCTCAAAAGATGATTTCTGGGGTAGAACCAAATTGTGATCTTTCCAAGGATTGCAGTACGAGTATAAGTTTAACTCTGGGTTCATCGAAAGATTCTGCAGTGGCCACTTTTCCGAGTCCGCAACATAGTTTATATTCCGAAGCCGAACAGAGTTTTTCAACACCAGAAGAAGGGAATTGCAGTGCCGAAAAGCTGGGGGAGAGTGGTGAAGCTTCTAATTCCTGTGATTTAAAACAGAGCTGTATAACAAGCATTTGCAGAGGCAGCACAGGCAGTGATGTTAGCGATGGCAGCAACTCAACTGGCATAAGTAGCACTTTGTACAAACCTCACAAAGCCAACGATTCGAGATGGGAGGCGATTCAAATCGTTCGATCTCGAGAAGGGTCGTTAGGACTTAATCAATTCAGGCTACTGAGCAGATTAGGATGTGGAGATATAGGCAGTGTTTATCTCTCTGAGTTGACTGGTACAAGAACCCATTTTGCAATGAAGGTGATGAACAAAGCTGATCTCGCCAGCAGAAAAAAGCTTTTGAGGGCTCAGACGGAAAGAGAGATACTGCAATCTCTGGATCATCCGTTTCTGCCAACGCTCTATTCACATTTTGAGACAGATAAGTTCTCTTGTCTGTTAATGGAGTTTTGTCCCGGCGGAGATCTGCACAACCTCCGGCAAAGACAGCCCGGCAAGTGCTTCCCCGAGCATGCTGCAAGGTTTTATGTGGCAGAGGTACTTCTAGCTTTGGAATATCTTCATATGCTAGGAATTATATACAGAGACCTTAAACCGGAGAATGTTCTGGTGAGGGAAGATGGGCACATAATGCTATCAGATTTTGATCTCTCTTTACGATGTGCTGTCTCGCCAACTCTGGTCAAATCGACAAAATTAACTTTCGAGTCTAAAACCTCTGCATATTGCATTCAGCCTGTGTGCATCCAACCGACTTGTGTGATTCAGCCTGATTGCATCCAACCGGCCTGTTTCAGCCCCCACTTTCTTTCGAGTCGACCCAAAAAACCGAAGGTGAAGCAAAAAAATGATATATCTCATCAAGTGAGCCCTCTGCCAGAGCTCGTCGCCGAACCAACAAGTGCTCGGTCCATGTCCTTTGTAGGCACCCATGAGTATTTGGCTCCTGAAATAATCAAAGGAGAGGGCCATGGAAGTGCTGTGGATTGGTGGACTTTCGGGATCTTCCTCTACGAGCTTCTCTTCGGCGAAACTCCATTCAAAGGGGCGGGAAATCGAGCTACTCTTTTTAATGTTGTAGGGAAGCCATTGAGATTTCCCGACTCTCCTACAGTCAGTTTTGCGGCAAAGGACCTAATCAGAGGTTTACTTGTTAAAGAGCCGCAGAACCGCTTTGCTTATCGACGTGGAGCAACTGAAATTAAACAGCATCCGTTTTTTCAGACTGTCAATTGGGCTCTGATTCGATGTTCAACTCCACCGGAGGTGCCAAGATCAGAGATTTTGCAGGTTCAGATAGTTGAAAAGGCCCCTGGAGTCGATGTAAAGCCTTCGGGTAATTATTTAGAGTTCGATTTCTTTTGA 1824 45.45 MDSPVQGVCSSPEVQNSTSLKHLKHSEYKAASSTSDVASPSNGKTFCHLNGSAASRNHPRNPALEDLQLVELLASKEESECVCATGTRSQKMISGVEPNCDLSKDCSTSISLTLGSSKDSAVATFPSPQHSLYSEAEQSFSTPEEGNCSAEKLGESGEASNSCDLKQSCITSICRGSTGSDVSDGSNSTGISSTLYKPHKANDSRWEAIQIVRSREGSLGLNQFRLLSRLGCGDIGSVYLSELTGTRTHFAMKVMNKADLASRKKLLRAQTEREILQSLDHPFLPTLYSHFETDKFSCLLMEFCPGGDLHNLRQRQPGKCFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSTKLTFESKTSAYCIQPVCIQPTCVIQPDCIQPACFSPHFLSSRPKKPKVKQKNDISHQVSPLPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGETPFKGAGNRATLFNVVGKPLRFPDSPTVSFAAKDLIRGLLVKEPQNRFAYRRGATEIKQHPFFQTVNWALIRCSTPPEVPRSEILQVQIVEKAPGVDVKPSGNYLEFDFF 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9499001 9500960 - Bma001189.2 Bma01g00962 75479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00962 607 Gene3D Transferase(Phosphotransferase) domain 1 308 377 - -
Bma01g00962 607 Gene3D Transferase(Phosphotransferase) domain 1 455 578 - -
Bma01g00962 607 ProSiteProfiles Protein kinase domain profile. 224 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00962 607 Pfam Protein kinase domain 457 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00962 607 Pfam Protein kinase domain 226 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00962 607 MobiDBLite consensus disorder prediction 177 196 - -
Bma01g00962 607 Gene3D Phosphorylase Kinase; domain 1 222 307 - -
Bma01g00962 607 CDD STKc_phototropin_like 223 578 - -
Bma01g00962 607 SMART serkin_6 224 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00962 607 MobiDBLite consensus disorder prediction 1 41 - -
Bma01g00962 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Bma01g00962 607 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 75 607 - -
Bma01g00962 607 MobiDBLite consensus disorder prediction 1 19 - -
Bma01g00962 607 MobiDBLite consensus disorder prediction 133 153 - -
Bma01g00962 607 SUPERFAMILY Protein kinase-like (PK-like) 197 580 IPR011009 -
Bma01g00962 607 PANTHER FLIPPASE KINASE 1-RELATED 75 607 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00962 Bma-Chr1:9499001 Bma14g00904 Bma-Chr14:10219310 0 dispersed
Bma01g00962 Bma-Chr1:9499001 Bma02g00370 Bma-Chr2:5889181 2.58E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66269 PF00069 Pkinase 9.30E-37 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00962 K08286 - csv:101219962 804.668