Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00979 ATGCAATTCAATCTCTTCAACAGCTTCTCAAGTAAAATCCCTCTCTCTCTCTCTCCCCATCTCTTTCTCTCTCTAAAGTTGGGTTTTTATGGGTGCAGCGAGAAGGCAGAATTGAAACCAGTAGCAGCCTCAAAAGTTGAGCAGATAACAGCAGAACTGCAAGGAGGTGGCAGCGGATTCAACCCAATCGAGAGAATCAAGAATGGATTCATTTACTTCAAATCTGAGAAATATGAGAAAAACCCAGCTTTATACTCGGAACTTGCCAAAGGACAGAGCCCCAAGTTTATGGTGTTTGCTTGTTCAGACTCGAGGGTCTGCCCTTCTCATGTTCTGAATCTCAAATACTCAGGACCTGGATCCGCCATTGAATACGCTGTTTTACACCTTAAGGTTGAACAAATTGTGGTGATTGGGCATAGTGCTTGTGGAGGAATCAAGGGGCTGTTGAGCTTCCCAGATGAAGGACCAACAACTACTGACTTCATAGAGGATTGGGTGAAGGTAGTCACACCTGCGAAGAAGAAAGTGCTGGGAAAACATCCCGATGCGCAATTCTCCGATTTATGTGGCCACTGCGAAAGGGAGGCTGTCAATGTTTCCATTGGGCATCTGCTGACCTATCCATTTGTCAGAGATGGCGTCTTGAATAAAACCCTAGCCCTCAAGGGTGGTTACTATGACTTCGTTAAAGGGAGCTTTGAGCTATGGAGTCTTGAATATGGCCTTTCTTCTCCTCTCCACGTATGA 750 45.47 MQFNLFNSFSSKIPLSLSPHLFLSLKLGFYGCSEKAELKPVAASKVEQITAELQGGGSGFNPIERIKNGFIYFKSEKYEKNPALYSELAKGQSPKFMVFACSDSRVCPSHVLNLKYSGPGSAIEYAVLHLKVEQIVVIGHSACGGIKGLLSFPDEGPTTTDFIEDWVKVVTPAKKKVLGKHPDAQFSDLCGHCEREAVNVSIGHLLTYPFVRDGVLNKTLALKGGYYDFVKGSFELWSLEYGLSSPLHV 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9660404 9661863 + Bma001203.1 Bma01g00979 75496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00979 249 PANTHER CARBONIC ANHYDRASE 114 248 IPR001765 GO:0004089|GO:0008270
Bma01g00979 249 Pfam Carbonic anhydrase 120 233 IPR001765 GO:0004089|GO:0008270
Bma01g00979 249 Gene3D Carbonic anhydrase 58 249 IPR036874 GO:0004089|GO:0008270
Bma01g00979 249 SUPERFAMILY beta-carbonic anhydrase, cab 58 244 IPR036874 GO:0004089|GO:0008270
Bma01g00979 249 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 101 108 IPR015892 GO:0004089|GO:0008270|GO:0015976
Bma01g00979 249 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 124 144 IPR015892 GO:0004089|GO:0008270|GO:0015976
Bma01g00979 249 SMART Pro_CA_2 89 238 IPR001765 GO:0004089|GO:0008270
Bma01g00979 249 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 33 115 - -
Bma01g00979 249 PANTHER CARBONIC ANHYDRASE 33 115 IPR001765 GO:0004089|GO:0008270
Bma01g00979 249 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 114 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00979 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - jre:108992857 338.961
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00049 Bma-Chr1:534473 Bma01g00979 Bma-Chr1:9660404 6.09E-92 dispersed
Bma01g00979 Bma-Chr1:9660404 Bma01g01372 Bma-Chr1:21239460 5.45E-43 dispersed
Bma01g00979 Bma-Chr1:9660404 Bma06g00622 Bma-Chr6:32838828 4.67E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1354 . . Bda01g01275 . Bpe02g01492 . . . Cmo14g00665 Cmo11g01691 Cma11g01430 Cma14g00650 Car11g01376 Car14g00590 . Cpe03g00563 . . . . . . . . Cla10g01352 Cam10g1257 Cec10g1433 Cco10g1407 Clacu10g1410 Cmu10g2180 Cre10g1563 . . Cone2ag0129 Cone16ag0926 . Csa05g02338 Chy04g01458 Cme04g01888 . Blo18g00336 . . . . Bma01g00979 . . . . . . . . . . Bhi11g01650 . . . Hepe02g1824 . . . . . . . . . . Csa03g03938 . .
Vvi18g503 . . Bda01g00913 . . . . . . Cmo12g00150 . . . Car12g00178 . . Cpe07g00166 Bhi04g00925 . . . . . . . . . . . . . . . . . . . . . . Blo18g00104 . . Bpe02g01152 Bpe05g00432 Bma01g00979 . . . . Cma12g00197 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003899 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 9 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00979 Bma_Chr01 FPKM 3.442276 3.228994 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0