Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00998 ATGGCTGCTCTGCAACTTCTCAGTTATGGAGCTGTTGATCGCTCCTCCTTATTCTACTCCAATGATTTATCGTCCTCGTTCTGGGGACGAGATTTGTGTATCGGCTCTAGGTGCAGTTCCAGAGTGAAAGTTCAGTTTAATGGGAGTTTCCCCAGGGTTTTCGCCATGTCAAATGGCGCACAGTCTCCTTTCAAGATGAACCTCAACGAGTACATGATTACTCTTGAAAAACCTCTCGGTATCCGCTTCGCGCTTACCATCGACGGAAAAATATTCGTTCACGCTCTTAAAAGAGGGGGCAATGCTGAGAAGTCAAGGATAATCATGGTGGGAGACACATTGAAGAAGGCTAGCGAATCGTCTGGTGGCAAGATCATACAGATCAATGACTTAAGTGATACCCAGAAGATGCTGAAGGAGAAATCAGGATCTTTTAGTTTGGTTCTTGAAAGACCCTTCTCTGCTTTTCCAATTCAACAGCTTCTATTTAGTGATTTTGACATATTATTCAATAGAGGTCGAGTCCCTATTGCCTCATGGAACAAGAATGTTATAGCACCGGCATTTACCGACAGTGATGGCAATTCTGGGTTTGCTGTGTTTTCCTCAAAGTTTTCAACATCACAAGGGTGGAATATTTTGAAGCAAAATGAGGCTATAAAACCACAAAAGCACAAGAATTCTCTCTTACCTCCCATAAAACAGCTGATCAGTATCTTTTCAGAAGAGGAATCTGGAGATGGAGAGTGGGGTCATGGGAGCTTCCCATTAGAGGAGTATACTAAAGCACTGCATCGGTCGAAAGGCGAGCTATACTATGATCACTTTCTTGGTATGCGCAATAGTAAGATTACAGAGCAAATATATGTGGGGTCATGCATACAAACTGAAGCTGATGTGGAGACTTTGGCAAAAATGGTAGGGGTTACTGCTGTTTTGAATTTCCAAAGTGGAATTGATGCAGAAAATTGGGGTATCAATTCTAAGTTAATTAATGAGTCGTGCCAAAGATTGGATATCCTGATGGTCAATTATCCAATAAGGGAAGGTGATTCTTATGACTTAAGGAAGAAGCTACCGTTTTGTGTGGGGTTACTATTACGCTTGTTGAAGAAGAGCCACCGTGTTTTTATTACGTGTACTACTGGTTTTGATCGATCTCCATCCTGTGTGATTGCATACCTGCATTGGATGACTGATACTTCCCTTCAGGCAGCATATAATTTTGTTACCAGTTTGCATATATGCAAGCCAGACAGGCCAGCTATTGCTTGGGCTACATGGGATCTCATAGCTCTGGTGGAAAATGGTAGGCACGACGGACCCGCAACACATGTTGTGACCTTTGTGTGGAATGGACACGAGGGAGAGCAAGTGGATTTGGTTGGAGATTTTACTGGAAATTGGAAGGAACCAGTGAGGGCAACCCACAAGGGAGGGCCAAGATATGAGGTGGAATTGAGACTTTCACAAGGAAAGTACAACTACAAGTATATAATAAACGGTCAATGGCGGCATTCAACATCATCACCGGCCGAGAGGGACGAGCGGGGGAACGTCAATAACGTGATTGAAATAGGCGATACTGCCAGTGTTCGACCTGCCGATCAACAGCACAAGAAAGATGCCAATATCTTAAAGGTGATCGAGAGGCCATTGACAGAAAACGAACGCTTTATGCTGGCCAAGGCTGCTCGATGCATCGCATTCTCCGTCTGCCCAATCAGGCTAGCTCCCAAG 1740 44.14 MAALQLLSYGAVDRSSLFYSNDLSSSFWGRDLCIGSRCSSRVKVQFNGSFPRVFAMSNGAQSPFKMNLNEYMITLEKPLGIRFALTIDGKIFVHALKRGGNAEKSRIIMVGDTLKKASESSGGKIIQINDLSDTQKMLKEKSGSFSLVLERPFSAFPIQQLLFSDFDILFNRGRVPIASWNKNVIAPAFTDSDGNSGFAVFSSKFSTSQGWNILKQNEAIKPQKHKNSLLPPIKQLISIFSEEESGDGEWGHGSFPLEEYTKALHRSKGELYYDHFLGMRNSKITEQIYVGSCIQTEADVETLAKMVGVTAVLNFQSGIDAENWGINSKLINESCQRLDILMVNYPIREGDSYDLRKKLPFCVGLLLRLLKKSHRVFITCTTGFDRSPSCVIAYLHWMTDTSLQAAYNFVTSLHICKPDRPAIAWATWDLIALVENGRHDGPATHVVTFVWNGHEGEQVDLVGDFTGNWKEPVRATHKGGPRYEVELRLSQGKYNYKYIINGQWRHSTSSPAERDERGNVNNVIEIGDTASVRPADQQHKKDANILKVIERPLTENERFMLAKAARCIAFSVCPIRLAPK 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10053479 10057314 + Bma030227 Bma01g00998 75515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00998 580 Gene3D Immunoglobulins 434 531 IPR013783 -
Bma01g00998 580 Pfam Glycogen recognition site of AMP-activated protein kinase 447 528 IPR032640 -
Bma01g00998 580 SUPERFAMILY PDZ domain-like 52 158 IPR036034 GO:0005515
Bma01g00998 580 CDD E_set_AMPKbeta_like_N 447 526 - -
Bma01g00998 580 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 580 IPR030066 GO:0005983
Bma01g00998 580 CDD DSP_laforin-like 279 425 IPR045204 GO:0019203|GO:0046838
Bma01g00998 580 Gene3D Protein tyrosine phosphatase superfamily 273 561 IPR029021 -
Bma01g00998 580 ProSiteProfiles PDZ domain profile. 72 153 IPR001478 GO:0005515
Bma01g00998 580 ProSiteProfiles Dual specificity protein phosphatase domain profile. 280 442 IPR020422 GO:0006470|GO:0008138
Bma01g00998 580 Pfam Dual specificity phosphatase, catalytic domain 296 417 IPR000340 GO:0008138|GO:0016311
Bma01g00998 580 SUPERFAMILY E set domains 444 527 IPR014756 -
Bma01g00998 580 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 277 415 IPR029021 -
Bma01g00998 580 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00978 Bma-Chr1:9654416 Bma01g00998 Bma-Chr1:10053479 0 dispersed
Bma01g00998 Bma-Chr1:10053479 Bma03g00369 Bma-Chr3:2743839 1.33E-33 dispersed
Bma14g00918 Bma-Chr14:10324654 Bma01g00998 Bma-Chr1:10053479 5.54E-06 dispersed
Bma01g00998 Bma-Chr1:10053479 Bma04g01112 Bma-Chr4:26169877 3.64E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00998 - - csv:101214241 890.567