Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00998 ATGGCTGCTCTGCAACTTCTCAGTTATGGAGCTGTTGATCGCTCCTCCTTATTCTACTCCAATGATTTATCGTCCTCGTTCTGGGGACGAGATTTGTGTATCGGCTCTAGGTGCAGTTCCAGAGTGAAAGTTCAGTTTAATGGGAGTTTCCCCAGGGTTTTCGCCATGTCAAATGGCGCACAGTCTCCTTTCAAGATGAACCTCAACGAGTACATGATTACTCTTGAAAAACCTCTCGGTATCCGCTTCGCGCTTACCATCGACGGAAAAATATTCGTTCACGCTCTTAAAAGAGGGGGCAATGCTGAGAAGTCAAGGATAATCATGGTGGGAGACACATTGAAGAAGGCTAGCGAATCGTCTGGTGGCAAGATCATACAGATCAATGACTTAAGTGATACCCAGAAGATGCTGAAGGAGAAATCAGGATCTTTTAGTTTGGTTCTTGAAAGACCCTTCTCTGCTTTTCCAATTCAACAGCTTCTATTTAGTGATTTTGACATATTATTCAATAGAGGTCGAGTCCCTATTGCCTCATGGAACAAGAATGTTATAGCACCGGCATTTACCGACAGTGATGGCAATTCTGGGTTTGCTGTGTTTTCCTCAAAGTTTTCAACATCACAAGGGTGGAATATTTTGAAGCAAAATGAGGCTATAAAACCACAAAAGCACAAGAATTCTCTCTTACCTCCCATAAAACAGCTGATCAGTATCTTTTCAGAAGAGGAATCTGGAGATGGAGAGTGGGGTCATGGGAGCTTCCCATTAGAGGAGTATACTAAAGCACTGCATCGGTCGAAAGGCGAGCTATACTATGATCACTTTCTTGGTATGCGCAATAGTAAGATTACAGAGCAAATATATGTGGGGTCATGCATACAAACTGAAGCTGATGTGGAGACTTTGGCAAAAATGGTAGGGGTTACTGCTGTTTTGAATTTCCAAAGTGGAATTGATGCAGAAAATTGGGGTATCAATTCTAAGTTAATTAATGAGTCGTGCCAAAGATTGGATATCCTGATGGTCAATTATCCAATAAGGGAAGGTGATTCTTATGACTTAAGGAAGAAGCTACCGTTTTGTGTGGGGTTACTATTACGCTTGTTGAAGAAGAGCCACCGTGTTTTTATTACGTGTACTACTGGTTTTGATCGATCTCCATCCTGTGTGATTGCATACCTGCATTGGATGACTGATACTTCCCTTCAGGCAGCATATAATTTTGTTACCAGTTTGCATATATGCAAGCCAGACAGGCCAGCTATTGCTTGGGCTACATGGGATCTCATAGCTCTGGTGGAAAATGGTAGGCACGACGGACCCGCAACACATGTTGTGACCTTTGTGTGGAATGGACACGAGGGAGAGCAAGTGGATTTGGTTGGAGATTTTACTGGAAATTGGAAGGAACCAGTGAGGGCAACCCACAAGGGAGGGCCAAGATATGAGGTGGAATTGAGACTTTCACAAGGAAAGTACAACTACAAGTATATAATAAACGGTCAATGGCGGCATTCAACATCATCACCGGCCGAGAGGGACGAGCGGGGGAACGTCAATAACGTGATTGAAATAGGCGATACTGCCAGTGTTCGACCTGCCGATCAACAGCACAAGAAAGATGCCAATATCTTAAAGGTGATCGAGAGGCCATTGACAGAAAACGAACGCTTTATGCTGGCCAAGGCTGCTCGATGCATCGCATTCTCCGTCTGCCCAATCAGGCTAGCTCCCAAG 1740 44.14 MAALQLLSYGAVDRSSLFYSNDLSSSFWGRDLCIGSRCSSRVKVQFNGSFPRVFAMSNGAQSPFKMNLNEYMITLEKPLGIRFALTIDGKIFVHALKRGGNAEKSRIIMVGDTLKKASESSGGKIIQINDLSDTQKMLKEKSGSFSLVLERPFSAFPIQQLLFSDFDILFNRGRVPIASWNKNVIAPAFTDSDGNSGFAVFSSKFSTSQGWNILKQNEAIKPQKHKNSLLPPIKQLISIFSEEESGDGEWGHGSFPLEEYTKALHRSKGELYYDHFLGMRNSKITEQIYVGSCIQTEADVETLAKMVGVTAVLNFQSGIDAENWGINSKLINESCQRLDILMVNYPIREGDSYDLRKKLPFCVGLLLRLLKKSHRVFITCTTGFDRSPSCVIAYLHWMTDTSLQAAYNFVTSLHICKPDRPAIAWATWDLIALVENGRHDGPATHVVTFVWNGHEGEQVDLVGDFTGNWKEPVRATHKGGPRYEVELRLSQGKYNYKYIINGQWRHSTSSPAERDERGNVNNVIEIGDTASVRPADQQHKKDANILKVIERPLTENERFMLAKAARCIAFSVCPIRLAPK 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10053479 10057314 + Bma030227 Bma01g00998 75515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00998 580 Gene3D Immunoglobulins 434 531 IPR013783 -
Bma01g00998 580 Pfam Glycogen recognition site of AMP-activated protein kinase 447 528 IPR032640 -
Bma01g00998 580 SUPERFAMILY PDZ domain-like 52 158 IPR036034 GO:0005515
Bma01g00998 580 CDD E_set_AMPKbeta_like_N 447 526 - -
Bma01g00998 580 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 580 IPR030066 GO:0005983
Bma01g00998 580 CDD DSP_laforin-like 279 425 IPR045204 GO:0019203|GO:0046838
Bma01g00998 580 Gene3D Protein tyrosine phosphatase superfamily 273 561 IPR029021 -
Bma01g00998 580 ProSiteProfiles PDZ domain profile. 72 153 IPR001478 GO:0005515
Bma01g00998 580 ProSiteProfiles Dual specificity protein phosphatase domain profile. 280 442 IPR020422 GO:0006470|GO:0008138
Bma01g00998 580 Pfam Dual specificity phosphatase, catalytic domain 296 417 IPR000340 GO:0008138|GO:0016311
Bma01g00998 580 SUPERFAMILY E set domains 444 527 IPR014756 -
Bma01g00998 580 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 277 415 IPR029021 -
Bma01g00998 580 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 580 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00998 - - - csv:101214241 890.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00978 Bma-Chr1:9654416 Bma01g00998 Bma-Chr1:10053479 0 dispersed
Bma01g00998 Bma-Chr1:10053479 Bma03g00369 Bma-Chr3:2743839 1.33E-33 dispersed
Bma14g00918 Bma-Chr14:10324654 Bma01g00998 Bma-Chr1:10053479 5.54E-06 dispersed
Bma01g00998 Bma-Chr1:10053479 Bma04g01112 Bma-Chr4:26169877 3.64E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma01g02539 . 23 322 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 2.3e-116 415.6
Bma04g01172 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma04g01175 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma08g00279 . 2 197 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 3.1e-59 227.3
Bma04g01172 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma04g01175 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma03g01302 . 1 190 Protein tyrosine phosphatase (PTP) family AT2G04550 67.9 2.5e-66 248.4
Bma03g00369 . 17 294 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 4.2e-116 414.5
Bma03g00203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 69.3 1.2e-107 386.3
Bma01g00998 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 3.6e-194 674.5
Bma01g00978 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 70.4 6.7e-193 670.2
Bma02g01405 . 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 57.0 1.1e-70 263.5
Bma03g01308 BCT 20 210 Protein tyrosine phosphatase (PTP) family AT2G32960 55.6 1.8e-65 246.1
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT2G32960 59.2 8.1e-50 194.1
Bma02g00600 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.1 1.4e-49 193.4
Bma08g00533 BCT 51 152 Protein tyrosine phosphatase (PTP) family AT2G32960 60.3 1.9e-38 156.4
Bma14g00635 . 1 319 Protein tyrosine phosphatase (PTP) family AT2G35680 56.4 6.6e-100 360.9
Bma01g00214 . 6 266 Protein tyrosine phosphatase (PTP) family AT2G35680 52.3 2.4e-78 289.3
Bma02g01405 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 2.5e-75 278.5
Bma03g01308 BCT 36 210 Protein tyrosine phosphatase (PTP) family AT4G03960 67.4 3.5e-69 258.1
Bma02g00600 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.5e-53 204.9
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT4G03960 66.9 3.7e-50 194.9
Bma08g00533 BCT 30 152 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 1.3e-39 159.8
Bma02g00600 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 3.7e-82 301.2
Bma03g01308 BCT 45 202 Protein tyrosine phosphatase (PTP) family AT3G02800 62.0 3.5e-56 214.9
Bma02g01405 . 47 205 Protein tyrosine phosphatase (PTP) family AT3G02800 61.0 7.8e-56 213.8
Bma08g00538 . 1 125 Protein tyrosine phosphatase (PTP) family AT3G02800 57.6 1.9e-38 156.0
Bma03g00116 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 5.9e-59 226.1
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g00514 BCT 8 605 Protein tyrosine phosphatase (PTP) family AT3G19420 66.9 1.0e-228 789.6
Bma03g01356 BCT 32 610 Protein tyrosine phosphatase (PTP) family AT3G19420 67.1 5.0e-223 770.8
Bma15g00872 . 34 591 Protein tyrosine phosphatase (PTP) family AT3G19420 57.4 4.0e-188 654.8
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma14g00419 . 56 243 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 2.8e-74 275.4
Bma12g00216 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 9.8e-111 396.7
Bma10g00319 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 2.2e-288 988.0
Bma10g00319 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 5.9e-262 900.2
Bma10g00319 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.9 7.7e-187 650.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00998 Bma_Chr01 FPKM 81.815735 84.614204 4.828454 4.924724 0.0 0.0 0.0 1.009811 0.338125 0.491803