Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01053 ATGGATGGGCCGAGTTTGCGTGGAGCCAGTAGCGTGGATGCATATCTTCCCAATTACAAACTTGGGAAGACTCTCGGAATTGGTTCATTTGGTAAGGTCAAAATTGCGGAGCATGTATTGACGGGTCATAAGGTAGCTATCAAGATCCTCAATCGTAAAAAGATAAAGAACTTGGATATGGAAGAGAAAGTGAGAAGGGAAATCAAGATCCTGAGATTGTTTATGCATCCTCACATAATAAGACTCTATGAGGTTATTGAGACTCCAGCTGACATTTTTGTTGTGATGGAGTATGTGAAGTGTGGGGAGCTCTTTGATTATATTGTGGAGAAGGGTCGGTTGCAGGAAGATGAAGCTCGCACTTTTTTCCAACAGCAGATAATATCTGGCGTGGAGTACTGCCACAGGAATAGGGTAGTACATAGAGACCTTAAACCTGAGAATTTGCTTTTGGATTCCAAGCGCAATGTGAAGATTGCAGACTTTGGTTTGAGCAATATAATGCGCGATGGTCATTTTCTGAAGACAAGTTGCGGAAGTCCCAATTATGCTGCTCCTGAGGTTATTTCTGGTAAACTATATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTTATATTGTATGCTCTTCTATGTGGTACACTTCCATTCGATGATGAAAACATACCCAACCTTTTTAAGAAAATAAAGGGTGGGATATATACTCTTCCCAGTCATTTATCTCCTGGTGCTAGAGATTTGATCCCAAGAATGCTTGTGGTAGACCCTACAAAGCGTATGACCATACCTGAGATTCGCCAACATCTTTGGTTTCAGGCCCATCTTGCACGCTATTTAGCCGTGCCTCCTCCTGATACAATGCAACAAGCTAAAAAGATTGATGAAGACATTCTCCAAGAAGTGGTGAAAATGGGATTTGACAGAAACCAGCTGTTGGAGTCTCTTCATAACAGAATTCAAAATGAGGTGAGTATTATAATATCTATTTTTGGCTTAACTTTTAAATTTTGTCTAACTACATGCAGCTGCGACATATTTCAGGCCACGGTCACATATTATTTGTTGCTGGATAACCGATTCCGCGAATCTGACTTCAACTCCATGCATCCCAGTGATGCCAAGTCTCCATCCGTAGGACATCGTCTTCCTGGATTTGTGGATTATCAAGGGATGGGATTGAGACCACAGGATCCCCTAGAGCGTAAATGGGCACTTGGATTACAGTCAAAAGCTCATCCTCGTGAAATAATGATGGAAGTCCTCAAGGCCCTGCAAGTACTCAATGTGGGGTGGAAGAAGATTGGACATTACAACATGAAATGTAGGTGGATACCTGGCATTCATGATCATCACGGAACCATGGTAAATGATCCTGTACACGGTGATTCAACCATCATCGAGAATGATGGGGTTTGTAAATCTCCAAATGTTGTCAAGTTTGAAGTACAGATTCGCAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCAAATATCAAGGGTATTCTTCTCGCTAAGTTAAGGGAATACAAATCAGATTTGAACAATCTGAAAAGTGAAGTTAAACGAATTGGATCCGGCAACTCATATGCATCTGCTCGGGATGAGTTATTGGAATCAGGAATGGCTGATACAATGACAGCATCAGCGGATCAAAGGGCACGATTGATGACCGCAACTGAGAGATTAAACTTATCTGGGGACAGAATTAACGAAAGTCGAAGAACCATGCTGCAAACAGAAGATCTTGGTGTTTCAATTCTTCAAGACTTGCATTCACAAAGGCAGTCTCTCTTGCATGCTCATAACACGCTTCATACAGTGGATGACAACATTGGGAAGAGTAAGAAAATCTTGACCAACATATCAATGAGAATGAACAGAAACAAGTGGATTATTGCAGCCGTTGTCGTCGTCCTTGTTATAGTCATTGCTCTGATACTGTACTTCAAACTGAGGTAA 1962 41.79 MDGPSLRGASSVDAYLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRKKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIFVVMEYVKCGELFDYIVEKGRLQEDEARTFFQQQIISGVEYCHRNRVVHRDLKPENLLLDSKRNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPTKRMTIPEIRQHLWFQAHLARYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLLESLHNRIQNEVSIIISIFGLTFKFCLTTCSCDIFQATVTYYLLLDNRFRESDFNSMHPSDAKSPSVGHRLPGFVDYQGMGLRPQDPLERKWALGLQSKAHPREIMMEVLKALQVLNVGWKKIGHYNMKCRWIPGIHDHHGTMVNDPVHGDSTIIENDGVCKSPNVVKFEVQIRKMDLEARSLQPNIKGILLAKLREYKSDLNNLKSEVKRIGSGNSYASARDELLESGMADTMTASADQRARLMTATERLNLSGDRINESRRTMLQTEDLGVSILQDLHSQRQSLLHAHNTLHTVDDNIGKSKKILTNISMRMNRNKWIIAAVVVVLVIVIALILYFKLR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11050491 11058472 - Bma001291.1 Bma01g01053 75570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01053 653 CDD UBA_SnRK1_plant 294 359 - -
Bma01g01053 653 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01053 653 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 488 - -
Bma01g01053 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Bma01g01053 653 CDD STKc_AMPK_alpha 16 272 - -
Bma01g01053 653 Gene3D - 550 630 - -
Bma01g01053 653 Pfam Vesicle transport v-SNARE protein N-terminus 484 523 IPR007705 GO:0006886|GO:0016020
Bma01g01053 653 Pfam Snare region anchored in the vesicle membrane C-terminus 561 626 - -
Bma01g01053 653 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Bma01g01053 653 Gene3D Kinase associated domain 1, KA1 407 492 - -
Bma01g01053 653 CDD SNARE_Vti1 560 621 - -
Bma01g01053 653 SMART serkin_6 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01053 653 SUPERFAMILY KA1-like 385 489 IPR028375 -
Bma01g01053 653 ProSiteProfiles Protein kinase domain profile. 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01053 653 Coils Coil 500 520 - -
Bma01g01053 653 CDD AMPKA_C 401 489 - -
Bma01g01053 653 Gene3D Transferase(Phosphotransferase) domain 1 9 352 - -
Bma01g01053 653 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 322 IPR015940 -
Bma01g01053 653 SUPERFAMILY Protein kinase-like (PK-like) 16 289 IPR011009 -
Bma01g01053 653 SUPERFAMILY t-snare proteins 483 524 IPR010989 GO:0016020|GO:0016192
Bma01g01053 653 PANTHER SERINE/THREONINE KINASE 8 488 - -
Bma01g01053 653 SUPERFAMILY SNARE fusion complex 564 622 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01053 Bma14g01450 CCT
Bma01g01053 Bma14g01450 ECH
Bma01g01053 Bma02g00431 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01053 Bma-Chr1:11050491 Bma11g00896 Bma-Chr11:34141643 1.59E-84 dispersed
Bma14g01450 Bma-Chr14:27923396 Bma01g01053 Bma-Chr1:11050491 2.46E-44 dispersed
Bma01g01053 Bma-Chr1:11050491 Bma02g00431 Bma-Chr2:6501342 1.40E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66274 PF00069 Pkinase 2.70E-77 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01053 K07198 - cit:102626026 784.252