Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01054 ATGGAGTTTCTGTCCAGAAAGTCGCCGCCGACAATGGTGGCGATTGCGGTGGCTTTGTGTGTTTTAGGGATGATGGTGCCAGAAGTTTCAGGCACTCGGTGGACTGTAGGGAGTAACAGGGGCTGGACCACCGGTGTTAACTACACTATTTGGGCTCAAGATAAGCACTTCTACATTGGCGACTGGCTCTTCTTTGTTTACGACCGGAATCAAAATAACGTTCTAGAGGTGAACCAAACGGACTACGAGACCTGCAATTCCGATCACCCGATCCATAGCTGGACAACAGGTGCCGGAAGAGACGTCGTCCCGCTCAACGTGACGAGGCCCTACTATTTCATCAGCGGCAAAGGTTTCTGCTATGGAGGTATGAAGCTGGCTATTAATGTTGAGAATTTACCTCCTCCTCCAATCATCTTTGCCATTAAATGA 432 49.31 MEFLSRKSPPTMVAIAVALCVLGMMVPEVSGTRWTVGSNRGWTTGVNYTIWAQDKHFYIGDWLFFVYDRNQNNVLEVNQTDYETCNSDHPIHSWTTGAGRDVVPLNVTRPYYFISGKGFCYGGMKLAINVENLPPPPIIFAIK 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11063948 11064852 - Bma001292.1 Bma01g01054 75571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01054 143 Gene3D - 31 133 IPR008972 -
Bma01g01054 143 Pfam Plastocyanin-like domain 42 124 IPR003245 GO:0009055
Bma01g01054 143 PANTHER BLUE COPPER PROTEIN 12 135 IPR039391 GO:0009055
Bma01g01054 143 PANTHER LAMIN-LIKE PROTEIN 12 135 - -
Bma01g01054 143 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055
Bma01g01054 143 SUPERFAMILY Cupredoxins 31 130 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01054 - - - pop:7496000 230.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01054 Bma02g00433 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01054 Bma-Chr1:11063948 Bma04g00446 Bma-Chr4:3668363 3.73E-17 dispersed
Bma01g02288 Bma-Chr1:80066624 Bma01g01054 Bma-Chr1:11063948 2.11E-08 transposed
Bma04g00798 Bma-Chr4:9105104 Bma01g01054 Bma-Chr1:11063948 3.69E-09 transposed
Bma13g00663 Bma-Chr13:16573221 Bma01g01054 Bma-Chr1:11063948 5.36E-36 transposed
Bma01g01054 Bma-Chr1:11063948 Bma02g00433 Bma-Chr2:6520297 1.39E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1592 . . . Bda13g01701 . Bpe14g00163 . . Cmo14g00570 Cmo11g01202 . . Car11g00977 . . Cpe03g00492 . . . . . . . . Cla10g01478 Cam10g1523 Cec10g1561 Cco10g1539 Clacu10g1536 Cmu10g2300 Cre10g1683 . . . . . . . . Blo17g00374 . . . . . Bma01g01054 Bma02g00433 . . . . . . . Cpe04g00183 . . . . . . . . . . . . . . . . Csa03g03792 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00881 . 1 142 Phytocyanin Superfamily AT1G48940 59.3 1.6e-44 176.0
Bma01g01054 BCT 26 137 Phytocyanin Superfamily AT5G15350 64.3 5.8e-44 174.1
Bma03g00881 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.1e-40 163.3
Bma03g00881 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.1e-40 163.3
Bma03g00881 . 1 142 Phytocyanin Superfamily AT1G48940 59.3 1.6e-44 176.0
Bma01g01054 BCT 26 137 Phytocyanin Superfamily AT5G15350 64.3 5.8e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01054 Bma_Chr01 FPKM 57.227554 56.167099 27.814802 28.570665 36.351307 42.19379 33.397457 20.003567 20.831627 16.389956