Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01079 | ATGGGGAGAGGAAGAGTTGAACTGAAGAGGATAGAAAACAAGATAAACAGGCAGGTTACGTTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAATAGCATGCTTAAAACCCTGGAAAGGTACCAAAAATGTAGCTATGGTGCTGTGGAAGTGAACAGGCCATGCAAGGAACTTGAGCAGAGCAGCTACAGAGAGTATTTGAAGTTAAAATCCAGATTTGAGTCCCTACAAAGAACTCAACGAAATCTGCTTGGAGAAGAATTGGGTCCATTGAACTCGAAAGAGCTTGAACAGCTTGAGCATCAGCTGGAGGCATCCATAACGCAAGTCAGATCCACCAAGACCCAGTACATGCTTGATCAGCTCTCTGATCTTCAAACCAAGGAACAAATGCTGATTGAAGCTAACAGAGCTTTGTCTATAAAGCTCGATGAAATCAGCTCGAGAAATCACCTCAGGCAAGCTTGGGAAGCTGGGGAGCAAAACATGTCATATGGCCAGCAGAATGCTCAAACTCAAGGATTTTTCCAGCCTCTGGACTGCAATCCCACTTTGCAAATTGGATACAGCGGAGCTGATGAGATGGCTGCAACTGGATCAGCTCACGGCCAGCAAGTCACTGGATTCATACCTGGATGGATGCTTTGA | 738 | 45.12 | MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNSMLKTLERYQKCSYGAVEVNRPCKELEQSSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLEHQLEASITQVRSTKTQYMLDQLSDLQTKEQMLIEANRALSIKLDEISSRNHLRQAWEAGEQNMSYGQQNAQTQGFFQPLDCNPTLQIGYSGADEMAATGSAHGQQVTGFIPGWML | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11388175 | 11392125 | + | Bma001328.1 | Bma01g01079 | 75596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01079 | 245 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma01g01079 | 245 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | Coils | Coil | 126 | 146 | - | - | |
Bma01g01079 | 245 | Pfam | K-box region | 89 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma01g01079 | 245 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 228 | - | - | |
Bma01g01079 | 245 | SUPERFAMILY | SRF-like | 2 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | Gene3D | - | 13 | 84 | IPR036879 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 228 | - | - | |
Bma01g01079 | 245 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977|GO:0045944 | |
Bma01g01079 | 245 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g01079 | 245 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01079 | Bma-Chr1:11388175 | Bma02g00452 | Bma-Chr2:6954226 | 3.16E-169 | dispersed | |
Bma03g00860 | Bma-Chr3:8304227 | Bma01g01079 | Bma-Chr1:11388175 | 5.92E-61 | dispersed | |
Bma01g01079 | Bma-Chr1:11388175 | Bma01g01093 | Bma-Chr1:11526000 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56701 | PF01486 | K-box | 1.90E-26 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01079 | K09264 | - | jre:108988112 | 402.134 |