Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01079 ATGGGGAGAGGAAGAGTTGAACTGAAGAGGATAGAAAACAAGATAAACAGGCAGGTTACGTTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAATAGCATGCTTAAAACCCTGGAAAGGTACCAAAAATGTAGCTATGGTGCTGTGGAAGTGAACAGGCCATGCAAGGAACTTGAGCAGAGCAGCTACAGAGAGTATTTGAAGTTAAAATCCAGATTTGAGTCCCTACAAAGAACTCAACGAAATCTGCTTGGAGAAGAATTGGGTCCATTGAACTCGAAAGAGCTTGAACAGCTTGAGCATCAGCTGGAGGCATCCATAACGCAAGTCAGATCCACCAAGACCCAGTACATGCTTGATCAGCTCTCTGATCTTCAAACCAAGGAACAAATGCTGATTGAAGCTAACAGAGCTTTGTCTATAAAGCTCGATGAAATCAGCTCGAGAAATCACCTCAGGCAAGCTTGGGAAGCTGGGGAGCAAAACATGTCATATGGCCAGCAGAATGCTCAAACTCAAGGATTTTTCCAGCCTCTGGACTGCAATCCCACTTTGCAAATTGGATACAGCGGAGCTGATGAGATGGCTGCAACTGGATCAGCTCACGGCCAGCAAGTCACTGGATTCATACCTGGATGGATGCTTTGA 738 45.12 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNSMLKTLERYQKCSYGAVEVNRPCKELEQSSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLEHQLEASITQVRSTKTQYMLDQLSDLQTKEQMLIEANRALSIKLDEISSRNHLRQAWEAGEQNMSYGQQNAQTQGFFQPLDCNPTLQIGYSGADEMAATGSAHGQQVTGFIPGWML 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11388175 11392125 + Bma001328.1 Bma01g01079 75596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01079 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g01079 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma01g01079 245 Coils Coil 126 146 - -
Bma01g01079 245 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g01079 245 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
Bma01g01079 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bma01g01079 245 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bma01g01079 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma01g01079 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma01g01079 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bma01g01079 245 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bma01g01079 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma01g01079 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma01g01079 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma01g01079 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01079 Bma-Chr1:11388175 Bma02g00452 Bma-Chr2:6954226 3.16E-169 dispersed
Bma03g00860 Bma-Chr3:8304227 Bma01g01079 Bma-Chr1:11388175 5.92E-61 dispersed
Bma01g01079 Bma-Chr1:11388175 Bma01g01093 Bma-Chr1:11526000 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56701 PF01486 K-box 1.90E-26 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01079 K09264 - jre:108988112 402.134