Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01081 ATGGGTTCAGTTTGCTGCTGCATGAATGCTGACGAAATTGAAAATTTTGTGAACTCAAATGGATCTGTTCATAGGAATTGCGCATGTCTTGGTTGCTTCGTCCAAAACTTTTTAAATGTGTATACATCATTATTTCGAAGAGGAGAAATGCATGCTATTTCTTCATCAGTTCAAGGGGCAGCATCTATGGCTTCTACAGCATCATATGACAACTCTATGCCTGATATGTATCATTCTCCTCCAAGGCCATTGCCGTATGATGCTGACCCTAGATATATCCGCTTACAGAGAGATGGACTAGTTTCGAGGCGTGATAAGGGCTCAAGTCACCTTCATGAAGAATCAGAACCTCTGAGAAGTGATGTTGATAGGGCCGAAGAATCGTTAAGTGGAGTGGACAAATTGGATTCTGAAGATGAATCTAAAGAGCACATTTATAAATCCTCTCTGAAGATCTCTTCAGTTAAAGCTACAATTGGAGCTGAAAATGTTTATATGCCATCTGAAGATGAGGATGTTTGTCCAACATGCCTGGAAGATTATACACGAGAGAATCCAAAGATAACAACCAAATGTGCACATCATTTCCACCTCGGGTGCATCTACGAGTGGATGGAGAGAAGTGACAGTTGTCCTGTCTGTGGCAAGGTATCCTCAACTATTCCTTGTGTT 672 41.22 MGSVCCCMNADEIENFVNSNGSVHRNCACLGCFVQNFLNVYTSLFRRGEMHAISSSVQGAASMASTASYDNSMPDMYHSPPRPLPYDADPRYIRLQRDGLVSRRDKGSSHLHEESEPLRSDVDRAEESLSGVDKLDSEDESKEHIYKSSLKISSVKATIGAENVYMPSEDEDVCPTCLEDYTRENPKITTKCAHHFHLGCIYEWMERSDSCPVCGKVSSTIPCV 224
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 11397018 11399375 - Bma030228 Bma01g01081 75598
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01081 224 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 218 - -
Bma01g01081 224 ProSiteProfiles Zinc finger RING-type profile. 174 214 IPR001841 -
Bma01g01081 224 SMART ring_2 174 214 IPR001841 -
Bma01g01081 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 220 IPR013083 -
Bma01g01081 224 Pfam Ring finger domain 173 214 IPR001841 -
Bma01g01081 224 SUPERFAMILY RING/U-box 168 219 - -
Bma01g01081 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 218 - -
Bma01g01081 224 MobiDBLite consensus disorder prediction 103 140 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01081 Bma-Chr1:11397018 Bma14g01059 Bma-Chr14:12803159 8.05E-64 dispersed
Bma01g01081 Bma-Chr1:11397018 Bma01g01095 Bma-Chr1:11534859 1.08E-166 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01081 - - zju:107416681 343.199