Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma01g01081 | ATGGGTTCAGTTTGCTGCTGCATGAATGCTGACGAAATTGAAAATTTTGTGAACTCAAATGGATCTGTTCATAGGAATTGCGCATGTCTTGGTTGCTTCGTCCAAAACTTTTTAAATGTGTATACATCATTATTTCGAAGAGGAGAAATGCATGCTATTTCTTCATCAGTTCAAGGGGCAGCATCTATGGCTTCTACAGCATCATATGACAACTCTATGCCTGATATGTATCATTCTCCTCCAAGGCCATTGCCGTATGATGCTGACCCTAGATATATCCGCTTACAGAGAGATGGACTAGTTTCGAGGCGTGATAAGGGCTCAAGTCACCTTCATGAAGAATCAGAACCTCTGAGAAGTGATGTTGATAGGGCCGAAGAATCGTTAAGTGGAGTGGACAAATTGGATTCTGAAGATGAATCTAAAGAGCACATTTATAAATCCTCTCTGAAGATCTCTTCAGTTAAAGCTACAATTGGAGCTGAAAATGTTTATATGCCATCTGAAGATGAGGATGTTTGTCCAACATGCCTGGAAGATTATACACGAGAGAATCCAAAGATAACAACCAAATGTGCACATCATTTCCACCTCGGGTGCATCTACGAGTGGATGGAGAGAAGTGACAGTTGTCCTGTCTGTGGCAAGGTATCCTCAACTATTCCTTGTGTT | 672 | 41.22 | MGSVCCCMNADEIENFVNSNGSVHRNCACLGCFVQNFLNVYTSLFRRGEMHAISSSVQGAASMASTASYDNSMPDMYHSPPRPLPYDADPRYIRLQRDGLVSRRDKGSSHLHEESEPLRSDVDRAEESLSGVDKLDSEDESKEHIYKSSLKISSVKATIGAENVYMPSEDEDVCPTCLEDYTRENPKITTKCAHHFHLGCIYEWMERSDSCPVCGKVSSTIPCV | 224 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11397018 | 11399375 | - | Bma030228 | Bma01g01081 | 75598 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma01g01081 | 224 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 218 | - | - | |
| Bma01g01081 | 224 | ProSiteProfiles | Zinc finger RING-type profile. | 174 | 214 | IPR001841 | - | |
| Bma01g01081 | 224 | SMART | ring_2 | 174 | 214 | IPR001841 | - | |
| Bma01g01081 | 224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 220 | IPR013083 | - | |
| Bma01g01081 | 224 | Pfam | Ring finger domain | 173 | 214 | IPR001841 | - | |
| Bma01g01081 | 224 | SUPERFAMILY | RING/U-box | 168 | 219 | - | - | |
| Bma01g01081 | 224 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 218 | - | - | |
| Bma01g01081 | 224 | MobiDBLite | consensus disorder prediction | 103 | 140 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g01081 | Bma-Chr1:11397018 | Bma14g01059 | Bma-Chr14:12803159 | 8.05E-64 | dispersed | |
| Bma01g01081 | Bma-Chr1:11397018 | Bma01g01095 | Bma-Chr1:11534859 | 1.08E-166 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma01g01081 | - | - | zju:107416681 | 343.199 |