Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01086 GACGATGATGAGAGACCTAAGATGATTACAAGTACTACTGAAGAGATCTTTCCCTCAAAACAAGATCATCACATAAAAATTGACAAGCCTTCGTCGAGTTCAACACCATGGCTTCGATTGAAGGATCCGAGGATTGTGCGAGTTTCACGGGCGTTCGGAGGAAAGGATAGACATAGCAAAGTTTGTACAATAAGAGGATTAAGAGACAGAAGAGTGAGACTTTCTGTTCCTACTGCCATTCAACTGTATGATCTTCAACATAGGCTTGGCCTTAGTCAGCCTAGCAAGGTTGTGGATTGGCTGCTTCATGCAGCAAAAGACGAAATCGATGAACTTCCTCCGCTGCCGATTCAACCGGAATTCTTCGGACAGAATTACCAATCGATGCTCGAATTAGTCTCTCCGAAAGTTGCAAAAGAGGAAGAAAACGAGAGAGAAAATTGGAGGAGCTTTAAAAAACACAGCAATGGCAGTGAAAAACAGGTTTTCTTGGACAATCAATGTCTTCCAGGTACGTTGAATAACAATTCAAGCTCATTTGTTAGTCAATTGGAGGCCTCAGATCCTTCATCTTCTCATTTAGGCAGCCATCTCTCAACTCAATCAGAACATCATCTTCATAACTTCAATTTCATGCAATTGCCTCCCCCTTTTTCTCTGCCGACAGGGTCTCAAATCTTCATATGCCCTTCGGGTTCGCAATGGTATTTTCCGTCACCGCCGTTCGAGAGTGATCCGAGACAAGCGAACCATTTACAGACGATGAGCTCAACTTCCCAAAGTCTCTTTACGAACTCTCTTACACCCTCTCCATACCCTATTAGCCAATCTATCAGACCCTTCCCTTTCAGCATGGCTCCTAAGCTATTTACCTCTCCGGAGAACAGTGATGGTCGACCGAAATAA 906 43.82 DDDERPKMITSTTEEIFPSKQDHHIKIDKPSSSSTPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQHRLGLSQPSKVVDWLLHAAKDEIDELPPLPIQPEFFGQNYQSMLELVSPKVAKEEENERENWRSFKKHSNGSEKQVFLDNQCLPGTLNNNSSSFVSQLEASDPSSSHLGSHLSTQSEHHLHNFNFMQLPPPFSLPTGSQIFICPSGSQWYFPSPPFESDPRQANHLQTMSSTSQSLFTNSLTPSPYPISQSIRPFPFSMAPKLFTSPENSDGRPK 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11430176 11431204 + Bma001334.1 Bma01g01086 75603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01086 301 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 149 IPR005333 GO:0003700
Bma01g01086 301 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Bma01g01086 301 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 139 298 - -
Bma01g01086 301 Pfam TCP family transcription factor 54 157 IPR017887 -
Bma01g01086 301 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 8 149 - -
Bma01g01086 301 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 139 298 IPR005333 GO:0003700
Bma01g01086 301 MobiDBLite consensus disorder prediction 180 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01086 - - - rcu:8289049 271.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01086 Bma-Chr1:11430176 Bma06g00019 Bma-Chr6:446399 4.79E-48 dispersed
Bma01g01086 Bma-Chr1:11430176 Bma01g01071 Bma-Chr1:11280842 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56702 PF03634 TCP 2.90E-26 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01086 Bma_Chr01 FPKM 29.035807 30.330666 37.875221 40.087967 47.129944 45.642403 45.499744 42.095764 38.820889 40.189907