Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01095 ATGGGTTCAGTTTGCTGCTGTATGAATGCTGACGAAATTGAAAATTTTGTGAACTCAAATGGATCTGTTCATAGGAATTGCGCATGTCTTGGTTGCTTCTTCCAAAACTTTTTAAATGTGTATACATCATTATTTCGAAGAGGAGAAATGCATGCTATTTCTTCATCAGTTCAAGGGGCAGCATCTATGGCTTCTGCAGCATCATATGACAACTCTATGCCCGATATGTATCATTCTCCTCCAAGGCCGTTGCCGTATGATGCTGACCCTAGATATATCCGCTTACAGAGAGATGGACTAGTTTCAAGGCGTGATAAGGGCTCAAGTCACCTTCATGAAGAATCAGAACCTCTGAGAAGTGATGTTGATAGGGCCGAAGAATCGTTAAGTGGAGTGGACAAATTGGATTCTGAAGATGAATCTAAAGAGCACATTTATAAATCCTCTCTGAAGATCTCTTCAGTAAAAGCTACAATTGGAGCTGAAAATGTTTATATGCCATCTGAAGATGAGGATGTTTGTCCAACATGCCTGGAAGATTATACACGAGAGAATCCGAAGATAACAACCAAATGTGCACATCATTTCCACCTCGGGTGCATCTACGAGTGGATGGAGAGAAGTGACAGTTGTCCTGTCTGTGGCAAGGTATCCTCAACTATTCCTCGTGTTTATAGGCTAAAATATTGA 690 41.01 MGSVCCCMNADEIENFVNSNGSVHRNCACLGCFFQNFLNVYTSLFRRGEMHAISSSVQGAASMASAASYDNSMPDMYHSPPRPLPYDADPRYIRLQRDGLVSRRDKGSSHLHEESEPLRSDVDRAEESLSGVDKLDSEDESKEHIYKSSLKISSVKATIGAENVYMPSEDEDVCPTCLEDYTRENPKITTKCAHHFHLGCIYEWMERSDSCPVCGKVSSTIPRVYRLKY 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11534859 11537220 - Bma001348.1 Bma01g01095 75612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01095 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 220 IPR013083 -
Bma01g01095 229 ProSiteProfiles Zinc finger RING-type profile. 174 214 IPR001841 -
Bma01g01095 229 SUPERFAMILY RING/U-box 168 221 - -
Bma01g01095 229 SMART ring_2 174 214 IPR001841 -
Bma01g01095 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 218 - -
Bma01g01095 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 218 - -
Bma01g01095 229 MobiDBLite consensus disorder prediction 103 140 - -
Bma01g01095 229 Pfam Ring finger domain 173 214 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01095 Bma-Chr1:11534859 Bma01g02022 Bma-Chr1:74863561 1.66E-10 dispersed
Bma01g01081 Bma-Chr1:11397018 Bma01g01095 Bma-Chr1:11534859 1.08E-166 transposed
Bma06g01322 Bma-Chr6:50195810 Bma01g01095 Bma-Chr1:11534859 2.56E-52 transposed
Bma14g00607 Bma-Chr14:6595365 Bma01g01095 Bma-Chr1:11534859 1.39E-23 transposed
Bma14g00703 Bma-Chr14:7670777 Bma01g01095 Bma-Chr1:11534859 1.21E-19 transposed
Bma01g01095 Bma-Chr1:11534859 Bma14g01059 Bma-Chr14:12803159 4.52E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01095 - - zju:107416681 340.117