Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01122 | ATGCGGATGAGCTGCAATGGGTGCAGAGTCCTGCGTAAAGGCTGCAGTGAAAATTGTAGTATTAGACCTTGCTTGCAGTGGATCAAGAGCCATGATTCTCAGGCCAACGCCACTGTTTTCCTCGCCAAGTTCTATGGCCGTGCTGGCCTTATGAACCTCATCAACGCCGGCCCTGACCACCTCCGCCCTGCTATTTTTAGGTCTTTGTTGTACGAGGCGTGTGGGAGGATTGTTAACCCGATTTATGGATCCGTCGGCTTGCTGTGGTCCGGAAGCTGGCAACTCTGCCAGGCCGCTGTTGAGGCCGTCCTGAAAGGAGCTCCGATCATTCCGATTACCTCTGAAGCAGCGGCTAATGGCCATGGACCGCCGCTTAAGCCATACGACATCCGACACGTTGCCAAGGATGAGAACTCCATGGCGTCTGATCGACTCCGGCGAGTAAAGACTCGCAGTCGTCACAATCGATCCGTCGGAAAGCCGAAGTCGAGCAAGAATTCTCCGATCGATTCCGTGGTCAATCCGGCTGGCGCTGTCTTATCCGATGCGATGAACAGGTCCACGAGTCACGAATCGTCGCTGAGTCACCAGTCCGAGGCGCCGAACATTGAAAACGAGAGCAAGGAATCGGAGAGCATCGTCTCCATGGAGACTGGCGAGGCGTCGGCGCCGGTAATGATCCGATCAGAAACAGAATCCTTCCAGAAGCGTAGGTACGAAGTAACAGAGGAAGGAGACATAGCCCTGGAGCTGACCTTAGGGCCGAAGCCGCCCTCGGTGTCACGTCCGGAGCAGGTGGTTCCTGTGAAGAAGCGAAAAGTCGACAAGACATCGCACATCGGCGCCTGTAAGACAGAACTGGGCCTGGAATTTCCGGCATGA | 882 | 55.33 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKSHDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPIIPITSEAAANGHGPPLKPYDIRHVAKDENSMASDRLRRVKTRSRHNRSVGKPKSSKNSPIDSVVNPAGAVLSDAMNRSTSHESSLSHQSEAPNIENESKESESIVSMETGEASAPVMIRSETESFQKRRYEVTEEGDIALELTLGPKPPSVSRPEQVVPVKKRKVDKTSHIGACKTELGLEFPA | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11853301 | 11854258 | - | Bma001382.1 | Bma01g01122 | 75639 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01122 | 293 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 290 | - | - | |
Bma01g01122 | 293 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 103 | IPR004883 | - | |
Bma01g01122 | 293 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 290 | - | - | |
Bma01g01122 | 293 | MobiDBLite | consensus disorder prediction | 251 | 273 | - | - | |
Bma01g01122 | 293 | MobiDBLite | consensus disorder prediction | 134 | 223 | - | - | |
Bma01g01122 | 293 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Bma01g01122 | 293 | PIRSF | AS2 | 1 | 291 | IPR017414 | - | |
Bma01g01122 | 293 | MobiDBLite | consensus disorder prediction | 181 | 201 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01122 | Bma-Chr1:11853301 | Bma15g01117 | Bma-Chr15:44210380 | 1.29E-51 | dispersed | |
Bma01g01122 | Bma-Chr1:11853301 | Bma02g00477 | Bma-Chr2:7683650 | 9.65E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56706 | PF03195 | LOB | 7.10E-24 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01122 | - | - | zju:107416542 | 384.03 |