Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01122 ATGCGGATGAGCTGCAATGGGTGCAGAGTCCTGCGTAAAGGCTGCAGTGAAAATTGTAGTATTAGACCTTGCTTGCAGTGGATCAAGAGCCATGATTCTCAGGCCAACGCCACTGTTTTCCTCGCCAAGTTCTATGGCCGTGCTGGCCTTATGAACCTCATCAACGCCGGCCCTGACCACCTCCGCCCTGCTATTTTTAGGTCTTTGTTGTACGAGGCGTGTGGGAGGATTGTTAACCCGATTTATGGATCCGTCGGCTTGCTGTGGTCCGGAAGCTGGCAACTCTGCCAGGCCGCTGTTGAGGCCGTCCTGAAAGGAGCTCCGATCATTCCGATTACCTCTGAAGCAGCGGCTAATGGCCATGGACCGCCGCTTAAGCCATACGACATCCGACACGTTGCCAAGGATGAGAACTCCATGGCGTCTGATCGACTCCGGCGAGTAAAGACTCGCAGTCGTCACAATCGATCCGTCGGAAAGCCGAAGTCGAGCAAGAATTCTCCGATCGATTCCGTGGTCAATCCGGCTGGCGCTGTCTTATCCGATGCGATGAACAGGTCCACGAGTCACGAATCGTCGCTGAGTCACCAGTCCGAGGCGCCGAACATTGAAAACGAGAGCAAGGAATCGGAGAGCATCGTCTCCATGGAGACTGGCGAGGCGTCGGCGCCGGTAATGATCCGATCAGAAACAGAATCCTTCCAGAAGCGTAGGTACGAAGTAACAGAGGAAGGAGACATAGCCCTGGAGCTGACCTTAGGGCCGAAGCCGCCCTCGGTGTCACGTCCGGAGCAGGTGGTTCCTGTGAAGAAGCGAAAAGTCGACAAGACATCGCACATCGGCGCCTGTAAGACAGAACTGGGCCTGGAATTTCCGGCATGA 882 55.33 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSHDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPIIPITSEAAANGHGPPLKPYDIRHVAKDENSMASDRLRRVKTRSRHNRSVGKPKSSKNSPIDSVVNPAGAVLSDAMNRSTSHESSLSHQSEAPNIENESKESESIVSMETGEASAPVMIRSETESFQKRRYEVTEEGDIALELTLGPKPPSVSRPEQVVPVKKRKVDKTSHIGACKTELGLEFPA 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11853301 11854258 - Bma001382.1 Bma01g01122 75639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01122 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 290 - -
Bma01g01122 293 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Bma01g01122 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 290 - -
Bma01g01122 293 MobiDBLite consensus disorder prediction 251 273 - -
Bma01g01122 293 MobiDBLite consensus disorder prediction 134 223 - -
Bma01g01122 293 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Bma01g01122 293 PIRSF AS2 1 291 IPR017414 -
Bma01g01122 293 MobiDBLite consensus disorder prediction 181 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01122 Bma-Chr1:11853301 Bma15g01117 Bma-Chr15:44210380 1.29E-51 dispersed
Bma01g01122 Bma-Chr1:11853301 Bma02g00477 Bma-Chr2:7683650 9.65E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56706 PF03195 LOB 7.10E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01122 - - zju:107416542 384.03