Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01147 ATGAAAAGGGAGTACCAAGACGGATCTGCAACAGGCTATGGGGGAAGAAGAGTGGGGAATCCTGGAAACCCAGAGAGCGCAGTTTTACAGTCAGCTGGAAAGGGTAAGATTTGGGAAGAACAAGATGCAGGAGGAATGGATGAGCTTCTCGCTGTTTTGGGATACAAGGTTAGGTCGTCGGACATGGCTGACGTTGCTCAGAAGCTTGAACAGCTCGAAATGGTCATGGGTACTGCTCAAGAAGATGGAATTTCTCACCTATCTTATGACACTGTTCATTACAATCCTTCTGATCTTTCTAGTTGGGTTCAAAGCATGCTTTCCGAGCTTAATAACCCTCTGAACAGCCTCGATTCTCTGCAAGATCAAAACCATCATCCGATTCTTGTCCCTTCCGAAGCTTCGGCGGTCATCAATGGCGGATTCTCGAATTCTCAGAGCCAGTTCGAGAATCAATCGAGTGTTTTTGACGATTTGGAGTTTGATCTAAGAGCAGATTCGTCGAGAAAACGATTGAAAAAATCACTTATTTCAGACTCATCGTCTTCTTCCTCCGGAGTTCCTGCTCCAAATTCTGACCAATCCCGACCGGTTGTTCTCGTCGATTCGCAGGAAGCTGGCGTACGGCTCGTCCACACTCTCATGGCCTGTGCAGAAGCGGTTCAAGAAGACAACATGAAGCTCGCCGATGCTTTGGTGAAACATATCGGAATTCTCGCCTCTTCTCAGGCCGGTGCCATGCGGAAAGTCGCCACCTACTTCGCGGAAGCACTCGCTCGCCGGATTTACAGAATTTACCGGCAAGATTGTCTCAACCCATCTTACTCCGATCTACTCCAGATGCACTTTTACGAGACCTGTCCTTACCTCAAATTCGCCCATTTCACTGCAAATCAAGCGATTCTCGAAGCTTTTGCAACCGCTAGCAGAGTCCACGTTATTGATTTCGGGCTAAAACAGGGGATGCAGTGGCCGGCTTTGATGCAGGCTCTCGCATTCCGGCCTGGAGGGCCGCCAGCTTTCCGCCTGACTGGAATCGGCCCGCCCCAACCCGATAACACCGACGCTTTACGGCAAGTTGGTTGGAAATTAGCGCAATTAGCAGACACCATCGGAATTAAATTTGAGTTTCGTGGGTTTCTATGCAACTGTCTTGCCGATCTGGAGCCGGAAATTCTTGATATCCGGCCACCTGAGTTGGAAGCTGTTGCGGTGAACTCAGTTTTTGAGCTTCACCGTCTTCTCTCTCGGCCTTCCGCCATTGATAAGGTGCTTTCTTCGATCAAGTGCATGAAGCCCAAAATTGTCACAATGGTGGAGCAAGAAGCGAATCACAATGGACCGGTTTTCTTGGACCGGTTCACTGAGGCTCTCCATTATTACTCTAACCTCTTTGACTCGTTGGAAGGGTCGGCTCCGCCGAGTCAGGACCTGGCCATGTCGGAGTTGTATCTCGGGAGACAGATATGCAACGTGGTGGCTTGTGAAGGTTCCGACCGAGTGGAACGGCACGAAACTTTGCCCCAGTGGCGGACTCGGATGGGATCGGCCGGGTTCGATCCTGTTCACCTCGGATCCAACGCGTTTAAGCAGGCGAGCATGCTACTGGCTCTATTCAACGGCGGGGATGGGTACAGAGTGGAGGAGAACAACGGGTGTCTGACGCTCGGATGGCATACACGGCCGTTGATCGCCACCTCGGCCTGGCAATTAGCTGCCGGAGAAATTCAGTGA 1734 50.98 MKREYQDGSATGYGGRRVGNPGNPESAVLQSAGKGKIWEEQDAGGMDELLAVLGYKVRSSDMADVAQKLEQLEMVMGTAQEDGISHLSYDTVHYNPSDLSSWVQSMLSELNNPLNSLDSLQDQNHHPILVPSEASAVINGGFSNSQSQFENQSSVFDDLEFDLRADSSRKRLKKSLISDSSSSSSGVPAPNSDQSRPVVLVDSQEAGVRLVHTLMACAEAVQEDNMKLADALVKHIGILASSQAGAMRKVATYFAEALARRIYRIYRQDCLNPSYSDLLQMHFYETCPYLKFAHFTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALAFRPGGPPAFRLTGIGPPQPDNTDALRQVGWKLAQLADTIGIKFEFRGFLCNCLADLEPEILDIRPPELEAVAVNSVFELHRLLSRPSAIDKVLSSIKCMKPKIVTMVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSAPPSQDLAMSELYLGRQICNVVACEGSDRVERHETLPQWRTRMGSAGFDPVHLGSNAFKQASMLLALFNGGDGYRVEENNGCLTLGWHTRPLIATSAWQLAAGEIQ 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12442892 12444656 - Bma001408.1 Bma01g01147 75664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01147 577 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 570 IPR005202 -
Bma01g01147 577 MobiDBLite consensus disorder prediction 177 196 - -
Bma01g01147 577 Pfam GRAS domain family 210 570 IPR005202 -
Bma01g01147 577 ProSiteProfiles GRAS family profile. 201 570 IPR005202 -
Bma01g01147 577 Coils Coil 62 82 - -
Bma01g01147 577 MobiDBLite consensus disorder prediction 1 32 - -
Bma01g01147 577 PANTHER DELLA PROTEIN RGL1 42 570 IPR030006 GO:0003712|GO:0005634
Bma01g01147 577 Gene3D - 45 110 IPR038088 -
Bma01g01147 577 MobiDBLite consensus disorder prediction 175 196 - -
Bma01g01147 577 Pfam Transcriptional regulator DELLA protein N terminal 47 113 IPR021914 -
Bma01g01147 577 SMART DELLA_2 47 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01147 Bma-Chr1:12442892 Bma06g01086 Bma-Chr6:47704024 0 dispersed
Bma07g00461 Bma-Chr7:5575831 Bma01g01147 Bma-Chr1:12442892 9.44E-129 transposed
Bma14g00764 Bma-Chr14:8465286 Bma01g01147 Bma-Chr1:12442892 3.58E-69 transposed
Bma14g01407 Bma-Chr14:26610798 Bma01g01147 Bma-Chr1:12442892 5.52E-98 transposed
Bma01g01147 Bma-Chr1:12442892 Bma02g00512 Bma-Chr2:10189118 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56707 PF03514 GRAS 7.30E-136 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01147 K14494 - tcc:18601873 823.157