Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01158 CGGAATCGCGCTTTTTCCGCTGCTTCTGAGAAGGAAATGACCAATCTAGAGGGGGAGGAGAGAGAGTACGAAGTGGAGGAAGTGAGAGAGAGGATAAAGTCTTCGAGAGGAAGCCGATTTCATCTGATAGAGAACGAGTTAAGGACGGAGTCGACGGAAAGAAAGTTTTGCAGCGAGAGCTTCATCAATGGCATCAAGGACTTCTCCAATGGCCTTGTCATCCACCCTGAAAACAGGTGGTACAGGGCTTGGATCAACTTCATACTGATATGGGCAGTTTACTCGTCTTTCTTTACACCAATGGAGTTCGGGTTCTTCAGAGGACTGCCTGAGAATCTCTTTATTCTTGACATTGCTGGACAGATTACCTTTTTTCTCGACATCATTCTTCAGTTCTTTGTTGCTTACAGAGACACTCAGACCTATGTTATTGTTCACAAACGTACCCATATTGCTCTCCGGTACTTGAAATCTGGGTTTGTGATTGATCTTCTTGGATGCATGCCTTGGGACATCATCTACAAGGCTTGTGGGAGAAGAGAGGAAGTGAGGTATCTTTTATGGATCAGATTAAGTAGGGTGCGAAAAGTCACTGATTTCTTTCGGAATATGGAGAGGGACATACGTATAAACTACATGTTCACTAGGATTGTCAAGCTTATTGTTGTTGAGCTCTATTGCACACATACAGCTGCCTGCATCTTTTACTATTTGGCTACGACTCTTCCATCTTCTGAAGAAGGATACACCTGGATTGGAAGCTTAAAGTTGGGAGACTACAGTTACACAAATTTCCGAGATATTGATATATGGAAACGCTACACAACATCCTTATATTTTGCCATAGTAACCATGGCCACAGTTGGTTATGGGGATACACATGCAGTTAATATGAGGGAAATGATATTTATAATGATATATGTCTCTTTTGACATGGTTCTTGGGGCCTATTTGATTGGTAACATGACAGCCTTAATTGTTAAAGGTTCAAAAACTGAAAAGTTCAGAGATAAAATGACAGATCTCATCAAATACATGAATCGAAACAGGCTTGGAAGAGACATCCGTAATCAGATTAAAGGTCATGTACGTTTACAGTACGAGAGTAGCTACACCGAAGCTTCTGTTCTTCAGGACATCCCCATTTCTATCCGCGCCAAGATTTCACAAACATTATACTTGCCTTACATTGAGAATGTTTCTCTCTTCAAGGGATGCTCAGCCGAGTTCATCAATCAAATAGTTTTAAAACTCCACGAGGAGTTTTTTCTCCCTGGAGAAGTGATAATGGAACAGCGAAATGCCGTAGATCAACTTTATTTTATCTGTCATGGTAAATTGGAGGAACTAGGCATAGGAGAAGATGGATCAGAAGAAACTATTTCAGTACTAGAACCCAACAACTCATTTGGAGAGATTTCTATTCTTTGCAATATTCCTCAACCCTATACAGTTCGCGTCAGGGAATTATGTCGGCTTCTGAGGCTCGACAAGCAGTCTTTTATGAATATTCTTGATATATACTTTTACGATGGCCGGAAAATCTTGAACAATCTTCTAGAGGGAAAAGAATCTAGTCTCCGAGTCAAGCAGTTGGAGTCAGATATTACATTTCACATTGGAAAGCAAGAAGCAGAACTTGCTTTAAAGGTGAATAGTGCAGCTTACCATGGAGATTTGTACCAGCTCAAAGGTTTGATCCGAGCAGGAGCCGATCCAAACAAGAAAGATTACGACGGAAGGTCACCATTGAAAAGATTATTATGTCTTATGGGATCGAACCTTTGGTTTCAGCACCTTGCAGCATCAAGAGGATACGAAGATATTGCACTTTTTCTCATTCAGGAAGGAGTAGACACCAACATAATAGATAAATTTGGAACCACGCCCTTACTCGAAGCTATAAAAAATGGGCACGATCGAATTGTGGCTTTACTCGTCCAACGAGGTGCTTCTTTAAAGATAGAAGAAGCTGGGACCTTTCTTTGTGCAGCCGTTGTAAGGGGGGATTCTAATTTCCTTAAAAGAGTGTTGGCCAATGGAATAGATCCGAACTCGAAAGATTATGATTATCGAACTCCACTCCATGTGGCAGCTGCTGAAGGATTGTATCTGATGGCTAAGCTGCTGATAGAAGCTGGGGCCAGTGTCTTTTCAAAAGACAGATGGGGAAATACACCTCTAGATGAGGCCAGGACGGTTGGAAACATGAATTTGATCAAACTATTGGAAGAAGCGAAGGCCTTTCAGCCCTCTGCATCATCTCCTCATCAAACCCATGAAGTCACTGATAAGAAGCATTCAAGACAATGCACTGTGTTCCCTTTCCACCCTTGGGATCCTAAAGAAAATAGAAGATCCGGGATTGTGTTATGGGTTCCACACACCATTCAAGAGCTAATCGAAGCAGCCATCGAGCAGCTCGAACTTAAGAGCGGGACTTGTATATTAACAGAAGACGGAGGTAAAATTCTTGATGTTGACATGATTAATGACGCTCAAAAGCTGTATCTAGGCAATGAAACAAATTAG 2532 41.67 RNRAFSAASEKEMTNLEGEEREYEVEEVRERIKSSRGSRFHLIENELRTESTERKFCSESFINGIKDFSNGLVIHPENRWYRAWINFILIWAVYSSFFTPMEFGFFRGLPENLFILDIAGQITFFLDIILQFFVAYRDTQTYVIVHKRTHIALRYLKSGFVIDLLGCMPWDIIYKACGRREEVRYLLWIRLSRVRKVTDFFRNMERDIRINYMFTRIVKLIVVELYCTHTAACIFYYLATTLPSSEEGYTWIGSLKLGDYSYTNFRDIDIWKRYTTSLYFAIVTMATVGYGDTHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGRDIRNQIKGHVRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIENVSLFKGCSAEFINQIVLKLHEEFFLPGEVIMEQRNAVDQLYFICHGKLEELGIGEDGSEETISVLEPNNSFGEISILCNIPQPYTVRVRELCRLLRLDKQSFMNILDIYFYDGRKILNNLLEGKESSLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLIRAGADPNKKDYDGRSPLKRLLCLMGSNLWFQHLAASRGYEDIALFLIQEGVDTNIIDKFGTTPLLEAIKNGHDRIVALLVQRGASLKIEEAGTFLCAAVVRGDSNFLKRVLANGIDPNSKDYDYRTPLHVAAAEGLYLMAKLLIEAGASVFSKDRWGNTPLDEARTVGNMNLIKLLEEAKAFQPSASSPHQTHEVTDKKHSRQCTVFPFHPWDPKENRRSGIVLWVPHTIQELIEAAIEQLELKSGTCILTEDGGKILDVDMINDAQKLYLGNETN 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12674262 12681192 + Bma001425.1 Bma01g01158 75675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01158 843 PANTHER POTASSIUM CHANNEL AKT1 13 842 IPR045319 GO:0005249|GO:0006813
Bma01g01158 843 Pfam Ion transport protein 82 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma01g01158 843 ProSiteProfiles Ankyrin repeat profile. 599 625 IPR002110 GO:0005515
Bma01g01158 843 Gene3D - 658 755 IPR036770 -
Bma01g01158 843 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
Bma01g01158 843 ProSiteProfiles cAMP/cGMP binding motif profile. 402 522 IPR000595 -
Bma01g01158 843 ProSiteProfiles Ankyrin repeat profile. 690 722 IPR002110 GO:0005515
Bma01g01158 843 SUPERFAMILY Ankyrin repeat 553 747 IPR036770 -
Bma01g01158 843 SMART cnmp_10 402 520 IPR000595 -
Bma01g01158 843 Coils Coil 6 26 - -
Bma01g01158 843 ProSiteProfiles KHA domain profile. 770 843 IPR021789 -
Bma01g01158 843 CDD CAP_ED 402 516 IPR000595 -
Bma01g01158 843 ProSiteProfiles Ankyrin repeat region circular profile. 690 722 - -
Bma01g01158 843 PANTHER POTASSIUM CHANNEL SKOR-LIKE 13 842 - -
Bma01g01158 843 Gene3D Helix hairpin bin 329 385 - -
Bma01g01158 843 Gene3D - 536 657 IPR036770 -
Bma01g01158 843 Gene3D - 83 328 - -
Bma01g01158 843 Pfam Cyclic nucleotide-binding domain 422 506 IPR000595 -
Bma01g01158 843 SUPERFAMILY Voltage-gated potassium channels 76 327 - -
Bma01g01158 843 PRINTS EAG/ELK/ERG potassium channel family signature 274 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g01158 843 PRINTS EAG/ELK/ERG potassium channel family signature 226 236 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g01158 843 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g01158 843 PRINTS EAG/ELK/ERG potassium channel family signature 318 327 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g01158 843 Pfam Ankyrin repeats (3 copies) 664 744 IPR002110 GO:0005515
Bma01g01158 843 Pfam Ankyrin repeats (3 copies) 554 655 IPR002110 GO:0005515
Bma01g01158 843 Gene3D Jelly Rolls 386 524 IPR014710 -
Bma01g01158 843 Pfam KHA, dimerisation domain of potassium ion channel 770 838 IPR021789 -
Bma01g01158 843 ProSiteProfiles Ankyrin repeat region circular profile. 626 657 - -
Bma01g01158 843 SUPERFAMILY cAMP-binding domain-like 330 520 IPR018490 -
Bma01g01158 843 SMART ANK_2a 626 655 IPR002110 GO:0005515
Bma01g01158 843 SMART ANK_2a 690 719 IPR002110 GO:0005515
Bma01g01158 843 SMART ANK_2a 723 753 IPR002110 GO:0005515
Bma01g01158 843 SMART ANK_2a 657 686 IPR002110 GO:0005515
Bma01g01158 843 SMART ANK_2a 593 622 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01158 Bma-Chr1:12674262 Bma07g00455 Bma-Chr7:5495345 3.95E-124 dispersed
Bma08g00105 Bma-Chr8:1237938 Bma01g01158 Bma-Chr1:12674262 0 transposed
Bma01g01158 Bma-Chr1:12674262 Bma02g00554 Bma-Chr2:11324190 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01158 K21867 - mnt:21409781 1309.66