Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01181 ATGGCGTCTTCCTCAAATTCCCCTTGTGCAGCCTGCAAGTTTCTCCGCCGGAAATGTCAACCGGAGTGCGTTTTCGCGCCGTACTTTCCACCAGACCAACCCCAAAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCAAGCAACGTCACCAAGCTCCTCAACGAGCTCCATCCTCACCAGCGAGAAGACGCCGTCAACTCCCTTGCCTACGAGGCCGATATGCGTCTCAGAGATCCAGTCTATGGGTGCGTCGGCGTCATCTCCCTCCTCCAGCACCAGCTTCGCCAGCTTCAGATTGACCTCAGCTGCGCAAAATCTGAGCTCTCAAAATACCAAAACCTGGGTCTCGCCGGCCATGGCCTCATCGCAGCTGCTGCTGCCGCTGCCACTACGACTCATAACCACCATCTCCAGAACCTCGGAATCAACCTGATTGGCTCCGGGAAAGATTACCACCACCACCACCAGTTATTCCCTCGCGATCAGGCCCAGCCGATCATGAGGGGCTTCGACATTGCCGGAAACAGTGTCTATGACGGCGGCCTCCTAGCAATGAACGTCTCCGCAAGTTTAGGTCAACTCAGCCAATTTCAGCAACCGAGGGCTGCCGGAGGCGATGATCACCGCCGAACAATCGATCCTTCTTAA 648 56.33 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQNLGLAGHGLIAAAAAAATTTHNHHLQNLGINLIGSGKDYHHHHQLFPRDQAQPIMRGFDIAGNSVYDGGLLAMNVSASLGQLSQFQQPRAAGGDDHRRTIDPS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13295367 13296014 - Bma001456.1 Bma01g01181 75698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01181 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 181 - -
Bma01g01181 215 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Bma01g01181 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 181 - -
Bma01g01181 215 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Bma01g01181 215 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01181 Bma-Chr1:13295367 Bma06g00422 Bma-Chr6:15286261 1.34E-58 dispersed
Bma01g01181 Bma-Chr1:13295367 Bma02g00579 Bma-Chr2:12612407 1.61E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56712 PF03195 LOB 4.10E-43 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01181 - - rcu:8263444 342.428