Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01196 ATGCAGGACGATGGTAATGAGGACGTTGGAGATAGGGTTTTGAGTAGAAATGGGGGAAGCTTTGGGGAGAGACGGGCTGCCAGATTTGGAGCTGGGTTCACTGCACCGAGGATCAACACGCCGAGGTCTCGGATCGTGAGTCCTACTGTTTTTCCGGCGGTTCACTCCCCTTGTCTCACTATACCATCTGGTATTAGCCCTACTGCGTTGCTTGATTCGCCCATCATGTTGCTCAACACGCAGGCTCTGCCATCTCCCACCACCGGAACTTTTCCTACTCCGGTTATGAATGATGATAATTCAATGCTCGATGCTGATGTTGATTGTCATACCATTGAATCTGAGCAACTCTCAATTGATTTTGAGCTCCCAGCGGAGTTTCTGACCGACATTCCTGCAATGAACTGTCCAGCTATGATTCATCAAAAAATCCAAAATTTTATACAAATGGAATGTGTGGCGATTTGCAGTGACTGTCGTTTTGACATAGCGAGCAATCCAACATCTTTGATAAAGGAATCAACACACTCGGAAGATATTGAAACAGACCATCCCCCCGAAGGAGAGCCTAAAGGATCATACCTTTCAGGGGGAATTCAAAGGACTTCAGCAGATGGATACAACTGGAGAAAATACGGACAGAAGCAGGTGAAGGGTAGTGAATATCCGAGGAGCTACTATAAGTGTACGTATTCAAATTGCCCAGTAAAGAAAAAGGTAGAACGCTCACATGATGGTCAAATAACAGAAATAATCTACAAGGGGGCTCATAATCACGAAAAGCCTCAGGCTGGATCAACTTTATCCCTTGCCGATGCTTCAGAGATGGGAGAAAGTAGTCGTCGTGGAATCAAAATTGAAAGTGGGCCAGCTTGGAGAAATCTTCAGTCGGGGTCGAAAGATTTTAAATCAATCCCAGACCAGAGGGCTGATGGAGTGGAAAGGACATCTCCAACATCTGTTGTAACCGAGCTCTCTGATCCATTCTCATCTACGCATATGAAAACTGTCGGGTTTGAACCAGCAGGAGCTGCAGATCTTTCATCTACCTTTGCTAGTCATGACGACGATGATAGGGCTACTCAGGGAAGTATATCAACCGACAATGACATTGATGGTGAGGAATCTGAATCAAAAAGAAGGCGTACAGATGGCTATTTTGTTGAAACGAATTTGTCATCGAGGGCCGTAAGAGAGCCTAGAGTTGTTATTCAAATAGAAAGTGAGGTTGACATTCTCGATGATGGATACCGATGGCGAAAATATGGGCAAAAGGTCGTGAAGGGAAATCCAAACCCCAGAAGCTACTACAAATGTACAAGTGCTGGATGTTCCGTAAGGAAACACGTGGAGAGGGCATCAAATAATCTAAAATGTGTACTTACGACATATGAAGGTCGACACAATCACGAAGTTCCTGCAGCCCGTAGCAGCAATCAAATCTCTTCAATCTGCGATACCACACATCCAAGCAACACTCAGCCAACCATATCCAAAGCTGCCGGTGTTTCAAAGCCCGAAACAAAAGTTCATTTTGATCGAAAACCCGAGTTCAACAACGCATATATCAGACCAGGATGTCTTGGCAATTTCAGCACCGATATGAAATTAGGGACTTCATCAATCTACCCTATGAAGATTCCTTTTTTGCAGAATCCAATTTCATATAGCTCATTTGGGTTAGATCCTAAATACACTACAACGAGCCATTCCAGCTGTATCACCTCCATAGTTCCAGACTTCCCCATTTCGCTACCATTGAATCCAAACCTTTCTGCTCCTGGTTTGAACTTGAGTAACGGAAGAACATTAGGTCCAGTTCGGACATTGGTTGGTAGGTCACAGCTTAAGGACGATGATGTTGGATTTGTGAAGCCGAAACAAGAGGAGAAGGATGATAAGCTTTCCCATGTCTCTATGGCTGCACTTGATAATGGCAATCTATCGTCACTCTGGTCATCCCCATCAGTTTATCAATGCAGGAGTAATAGTCATTTTCCTTAG 2004 44.41 MQDDGNEDVGDRVLSRNGGSFGERRAARFGAGFTAPRINTPRSRIVSPTVFPAVHSPCLTIPSGISPTALLDSPIMLLNTQALPSPTTGTFPTPVMNDDNSMLDADVDCHTIESEQLSIDFELPAEFLTDIPAMNCPAMIHQKIQNFIQMECVAICSDCRFDIASNPTSLIKESTHSEDIETDHPPEGEPKGSYLSGGIQRTSADGYNWRKYGQKQVKGSEYPRSYYKCTYSNCPVKKKVERSHDGQITEIIYKGAHNHEKPQAGSTLSLADASEMGESSRRGIKIESGPAWRNLQSGSKDFKSIPDQRADGVERTSPTSVVTELSDPFSSTHMKTVGFEPAGAADLSSTFASHDDDDRATQGSISTDNDIDGEESESKRRRTDGYFVETNLSSRAVREPRVVIQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASNNLKCVLTTYEGRHNHEVPAARSSNQISSICDTTHPSNTQPTISKAAGVSKPETKVHFDRKPEFNNAYIRPGCLGNFSTDMKLGTSSIYPMKIPFLQNPISYSSFGLDPKYTTTSHSSCITSIVPDFPISLPLNPNLSAPGLNLSNGRTLGPVRTLVGRSQLKDDDVGFVKPKQEEKDDKLSHVSMAALDNGNLSSLWSSPSVYQCRSNSHFP 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13603229 13606826 + Bma001475.2 Bma01g01196 75713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01196 667 SUPERFAMILY WRKY DNA-binding domain 407 473 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 MobiDBLite consensus disorder prediction 173 197 - -
Bma01g01196 667 Pfam WRKY DNA -binding domain 205 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 Pfam WRKY DNA -binding domain 414 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 33 99 - -
Bma01g01196 667 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 98 603 - -
Bma01g01196 667 MobiDBLite consensus disorder prediction 313 333 - -
Bma01g01196 667 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 33 99 IPR044810 GO:0003700
Bma01g01196 667 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 603 IPR044810 GO:0003700
Bma01g01196 667 SUPERFAMILY WRKY DNA-binding domain 202 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 Gene3D WRKY domain 198 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 MobiDBLite consensus disorder prediction 255 382 - -
Bma01g01196 667 Gene3D WRKY domain 400 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 MobiDBLite consensus disorder prediction 174 188 - -
Bma01g01196 667 ProSiteProfiles WRKY domain profile. 408 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 SMART WRKY_cls 413 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01196 667 ProSiteProfiles WRKY domain profile. 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01196 Bma-Chr1:13603229 Bma10g00638 Bma-Chr10:8786790 1.69E-112 dispersed
Bma10g00018 Bma-Chr10:284863 Bma01g01196 Bma-Chr1:13603229 5.11E-72 dispersed
Bma01g01196 Bma-Chr1:13603229 Bma10g00588 Bma-Chr10:7220605 2.98E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56713 PF03106 WRKY 7.80E-24 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01196 K18835 - zju:107412508 676.781