Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01204 ATGAGTTGTTGCCCGTGTTTCTTATCACAAAGAAATGAAACAATGACATGCAAGAGAGAGAATTCTTTTCCTAACTTCAATGATCATTCTGCCTCGAGCTTGCCCGAAAAAAAGAAGAAGAAAGCCGGAGCTGAGATGAAAAAGGAGAAGAACCAAGCAGAAAAAGGAAACATCGCAGCAGAAAACTTCACATTCAGAGAGTTAGCAACTGCAACAAACAACTTTAGACAGGAATGTCTTCTGGGTGAAGGGGGCTTTGGAAGAGTTTATAAAGGAACCCTAAAACCTACCAACCAGGTTGTGGCTGTGAAGCAGCTAGACAGAAATGGTCTACAAGGAAATAAGGAGTTTCTTGTTGAGGTTCTCATGTTAAGCCTCTTGCACCATCCTAACTTGGTCAACCTTGTCGGATACTGCGCCGATGGTGATCAACGGCTTCTCGTTTATGAGTTCATGTCTAATGGATCTCTCGAGGATCATCTTCTTGATATAGAAGACGAAGAGAAGACATTGGATTGGTACTCGAGAATAAAGATAGCATCAGGAGCGGCAAGAGGACTTGAATATCTACACGACAAGGTCGATCCACCAGTAATATACAGGGATCTTAAGTCCTCAAACATCTTGTTGGACCACGATTACAACCCTAAGTTATCGGATTTTGGGCTAGCAAAGCTGGGCCCGATCGGCGACAAAGTGCACGTGTCCTCCAGGATCATGGGAACTTACGGCTATTGTGCCCCCGAATACTCGAGGAACAGAGATCTCACTTTGAAATCCGATGTGTACAGCTTTGGCGTAGTTTTGCTCGAGCTCGTCACAGGGAGAAGAGCAATCGACACGACTCGGCCAAGCAGTGAGCAAAATCTTGTTAGTTGGGCTGAACCATTATTCAGAGATCCTAAGAAGTACCCGGAAATGGCAGACCCACAACTCAAAGGGAACTTCCCAGAAAAAGACCTGAATCAAGCGGTTGCCATAGCCGCCATGTGCCTCCAGGAAGAAGCTTCAGTCCGTCCATTAATAAGCGACGTCGTCATCGCCCTCAGCTTCCTCTCCTCCTCTCCCCCGCCGTCACCTTCCTCTCCCGACCACCTTCCTCGTGAAGAAGACGAGAATTCAGACTCCTCAAACGGAGAGGAAGATGAAGCTGAAAAAGACGGCGAGGAAGAAGCTGCTAACAACGACGTTCAAATGCAAGAGGTTTGTCAGAGCTCGCCGAGCTCCGGCAAGAGCAGTTACAGGTCGGAGAGTGAGAGCTTCTCTTCAACCCACGCGAGAAGGAGCAGTAAAGTACCGGAGGACGCCATGTTTGTAAGCAGGAACAGCAGTTTGAACAGCAGAAAGTCTGTCTTCAATGGAGGACCAGTGGTGAGCCATAACACTAGTAAAGTTGATTCTGATCGTCATGAAAATGGAAGCAGCTGGGGATCGGAGGAAGAGAGTGGGTATTCTTGTAGCCCAAACAGGTTAATGATAAGCTTTCACAAGATGGAAGGATCACAAAGTGGAAAGATTTTCTCACAGGTCAGTGACAACGACAGAGGATCAGAGAATCGGAGTGTTTCTTTTTAG 1575 46.86 MSCCPCFLSQRNETMTCKRENSFPNFNDHSASSLPEKKKKKAGAEMKKEKNQAEKGNIAAENFTFRELATATNNFRQECLLGEGGFGRVYKGTLKPTNQVVAVKQLDRNGLQGNKEFLVEVLMLSLLHHPNLVNLVGYCADGDQRLLVYEFMSNGSLEDHLLDIEDEEKTLDWYSRIKIASGAARGLEYLHDKVDPPVIYRDLKSSNILLDHDYNPKLSDFGLAKLGPIGDKVHVSSRIMGTYGYCAPEYSRNRDLTLKSDVYSFGVVLLELVTGRRAIDTTRPSSEQNLVSWAEPLFRDPKKYPEMADPQLKGNFPEKDLNQAVAIAAMCLQEEASVRPLISDVVIALSFLSSSPPPSPSSPDHLPREEDENSDSSNGEEDEAEKDGEEEAANNDVQMQEVCQSSPSSGKSSYRSESESFSSTHARRSSKVPEDAMFVSRNSSLNSRKSVFNGGPVVSHNTSKVDSDRHENGSSWGSEEESGYSCSPNRLMISFHKMEGSQSGKIFSQVSDNDRGSENRSVSF 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13833637 13838133 - Bma001490.1 Bma01g01204 75721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01204 524 MobiDBLite consensus disorder prediction 353 487 - -
Bma01g01204 524 CDD STKc_IRAK 81 346 - -
Bma01g01204 524 PANTHER RECEPTOR-LIKE KINASE LIP1 1 436 - -
Bma01g01204 524 MobiDBLite consensus disorder prediction 436 462 - -
Bma01g01204 524 MobiDBLite consensus disorder prediction 502 524 - -
Bma01g01204 524 Gene3D Phosphorylase Kinase; domain 1 34 151 - -
Bma01g01204 524 Pfam Protein kinase domain 77 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01204 524 MobiDBLite consensus disorder prediction 26 53 - -
Bma01g01204 524 PANTHER OS07G0668900 PROTEIN 1 436 - -
Bma01g01204 524 MobiDBLite consensus disorder prediction 397 420 - -
Bma01g01204 524 MobiDBLite consensus disorder prediction 374 390 - -
Bma01g01204 524 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01204 524 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01204 524 Gene3D Transferase(Phosphotransferase) domain 1 152 356 - -
Bma01g01204 524 MobiDBLite consensus disorder prediction 32 53 - -
Bma01g01204 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Bma01g01204 524 SUPERFAMILY Protein kinase-like (PK-like) 62 374 IPR011009 -
Bma01g01204 524 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01204 Bma-Chr1:13833637 Bma15g00679 Bma-Chr15:11162224 3.53E-178 dispersed
Bma13g01172 Bma-Chr13:45031311 Bma01g01204 Bma-Chr1:13833637 5.78E-73 dispersed
Bma01g01204 Bma-Chr1:13833637 Bma02g00609 Bma-Chr2:14042659 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66276 PF00069 Pkinase 2.20E-47 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01204 - - atr:18447220 508.449