Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01255 ATGAATGATCGCTCACATCTTGAACCAGATGATTCTGAGTTTGTCGAAGTCGATCCAACTGGAAGATATGGAAGATACTGTGAAATCCTTGGAAAAGGAGCTTCCAAGACAGTTTACCGAGCATTTGATGAGTACGAAGGGATTGAAGTTGCTTGGAATCAGATCAAACTCTATGATTTTCTGCAATGTCCAGAAGATCTGGAGAGGCTCTACAGTGAAATCCATCTCCTAAAAACATTGAAGCACAAAAATATTATGAAATTCTACACTTCTTGGGTCGATACTTCCAATAGGAACATCAATTTTGTCACTGAAATGTTCACTTCTGGAACCCTAAGACAGTATAGGCTAAAGCATAGGAGAGTAAACATTAGAGCCGTGAAGCATTGGTGTAGACAGATCTTGAAAGGGCTTCATTATCTTCATAGCCATGATCCACCTGTGATTCACAGAGATCTAAAGTGCGATAATATCTTTGTAAATGGAAATCAAGGAGAGGTGAAGATAGGAGATCTTGGCCTTGCGGCGATTCTCCGAAAATCATTTGCCGATCGTTGTGTTGGAACTCCGGAATTTATGGCTCCGGAAGTGTACGAAGAGGCATACAATGAATTAGTAGACATCTATTCATTTGGTATGTGCATACTGGAAATGGGAAAAAAACCGGATGCCTTGTACAAAGTGAAGGATCCAGAAGTAAAACAATTCGTCGAGAAATGTTTGGCAACAGTTTCACTTAGGCTATCGGCAAAGGAGCTGTTGAATGACCCTTTTCTCCAAATTGAAGATTGTGAATATGAGATGAGATCCTTCGATTGTGGGTTTAGGGATGCGGGTCCGACGATAAGGCAGTCTTTCTTCGATCTAAATGGGAGTAAAAGTACCCTTTGTAATGGAGTTTCTGATGATTACAATTATTATGATGCTTCGAGTGAATGGGGGTATTTTCCAGCTGAGGTCGGGCATAGTGGAATCGAGCTTTTTGAGCGTCACGACGATGGGCATTACGAAGATGTTGACGTAAGTATTAAAGGGAAGAGGAGAGAAAATGGTGACATCTTTCTGAGACTACGAATTACGGATAAAGATGGCTTGATCCGAAACATATATTTCCCTTTTGACGTTGAGATCGATAAAGCACTCAGCGTAGCAACTGAAATGGTGGCGGAACTCGATATAATGGACCAAGATGTGACAAGAATAGCAGATATGATTGACGGGGAGATTGCTTCCATGGTTCCCCAATGGAGGCTCAGGCATGGCATGGAGGATTCGATTAATTTTGCTGATCAAACTTTTTGTCAGAATTGTGCATCGAATCGGACATCATATGGATCTTTAATGGAGTATTTGACGACTGATTCTTCTGGAAAGAACTTGCAGGTTTATAAGTGCTGTAAAAATGGCTGTGCCACTACTCACGGCCGTTTCGAGGAGATTACCTTCCAAGCGACTGATGGCTCTGAGAATGATATGAAAGAGCCTGCTTTGAACGCATCGAGCCAATCGAATTGTCTTAATTATCATGAGACTTTGGGAGGCCATGAATTTAGCTCAGCAAGCTGTGAACCAAACCAGTCTGACGAAGAATATGAAGAAACAGATCGGCAAGTGTCAAAAATCAAAACAAGTGGAAGTTTTTGCGGAGACTCAGGTATGTTTTTTCCAAAAGCTATAAAACAGAAGCATGATGTTTTAATTGATTCGAGTTTTCTGAACATAAAACCAAAAACAGTTTTTGAAAACATACCCTTTTAG 1758 40.78 MNDRSHLEPDDSEFVEVDPTGRYGRYCEILGKGASKTVYRAFDEYEGIEVAWNQIKLYDFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTSNRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILKGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSFADRCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMGKKPDALYKVKDPEVKQFVEKCLATVSLRLSAKELLNDPFLQIEDCEYEMRSFDCGFRDAGPTIRQSFFDLNGSKSTLCNGVSDDYNYYDASSEWGYFPAEVGHSGIELFERHDDGHYEDVDVSIKGKRRENGDIFLRLRITDKDGLIRNIYFPFDVEIDKALSVATEMVAELDIMDQDVTRIADMIDGEIASMVPQWRLRHGMEDSINFADQTFCQNCASNRTSYGSLMEYLTTDSSGKNLQVYKCCKNGCATTHGRFEEITFQATDGSENDMKEPALNASSQSNCLNYHETLGGHEFSSASCEPNQSDEEYEETDRQVSKIKTSGSFCGDSGMFFPKAIKQKHDVLIDSSFLNIKPKTVFENIPF 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16356192 16359516 + Bma001559.1 Bma01g01255 75772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01255 585 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 354 408 IPR024678 GO:0004674|GO:0005524
Bma01g01255 585 Gene3D - 335 419 - -
Bma01g01255 585 SMART serkin_6 24 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01255 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Bma01g01255 585 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 218 - -
Bma01g01255 585 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 219 544 - -
Bma01g01255 585 SUPERFAMILY Protein kinase-like (PK-like) 26 260 IPR011009 -
Bma01g01255 585 Pfam Protein kinase domain 28 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01255 585 CDD STKc_WNK 22 259 - -
Bma01g01255 585 ProSiteProfiles Protein kinase domain profile. 24 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01255 585 MobiDBLite consensus disorder prediction 517 536 - -
Bma01g01255 585 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Bma01g01255 585 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 218 - -
Bma01g01255 585 Gene3D Transferase(Phosphotransferase) domain 1 107 264 - -
Bma01g01255 585 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 219 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01255 Bma-Chr1:16356192 Bma03g00765 Bma-Chr3:7005179 3.16E-155 dispersed
Bma01g01255 Bma-Chr1:16356192 Bma01g01257 Bma-Chr1:16565278 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66277 PF00069 Pkinase 8.80E-43 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01255 K08867 - zju:107412222 803.897