Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01257 ATGAATGATCGCTCACATCTTGAACCAGATGATTCTGAGTTTGTCGAAGTCGATCCAACTGGAAGATATGGAAGATACTGTGAAATCCTTGGAAAAGGAGCTTCCAAGACAGTTTACCGAGCATTTGATGAGTACGAAGGGATTGAAGTTGCTTGGAATCAGATCAAACTCTATGATTTTCTGCAATGTCCAGAAGATCTGGAGAGGCTCTACAGTGAAATCCATCTTCTAAAAACATTGAAGCACAAAAATATTATGAAATTCTACACTTCTTGGGTCGATACTTCCAATAGGAACATCAATTTTGTCACTGAAATGTTCACTTCTGGAACCCTAAGACAGTATAGGCTAAAGCATAGGAGAGTAAACATTAGAGCCGTGAAGCATTGGTGTAGACAGATCTTGAAAGGGCTTCATTATCTTCATAGCCATGATCCACCTGTGATTCACAGAGATCTAAAGTGCGATAATATCTTTGTAAATGGAAATCAAGGAGAGGTGAAGATAGGAGATCTTGGCCTTGCGGCGATTCTCCGAAAATCATTTGCCGATCGTTGTGTTGGAACTCCGGAATTTATGGCTCCGGAAGTGTACGAAGAGGCATACAATGAATTAGTAGACATCTATTCATTTGGTATGTGCATACTGGAAATGGTAACATTTGAATATCCATACAGTGAATGTACTCATCCTGCTCAGATCTACAAGAAAGTTATTTCTGGAAAAAAACCGGATGCCTTGTACAAAGTGAAGGATCCAGAAGTAAAACAATTCGTCGAGAAATGTTTGGCAACAGTTTCACTTAGGCTATCGGCAAGGGAGCTGTTGAATGACCCTTTTCTCCAAATTGAAGATTGTGAATATGAGATGAGATCCTTGGATTGTGGGTTTAGGGATGCGGGTCTGACGATAAGGCAGTCTTTCTTCGATCTAAATGGGAGTAAAAGTACCCTTTGTAATGGAGTTTCTGATGATTACAATTATTATGATGCTTCGAGTGAATGGGGGTATTTTCCAGCTGAGGTCGGGCATAGTGGAATCGAGCTTTTTGAGCGTCATGACGATGGACATTACGAAGATGTTGACGTAAGTATTAAAGGGAAGAGGAGGGAAAATGGTGACATCTTTCTGAGACTACGAATTACAGATAAAGATGGCTTGATCCGAAACATATATTTCCCTTTTGACGTTGAGATCGATAAAGCACTCAGCGTAGCAACTGAAATGGTGGCGGAACTCGATATAATGGACCAAGATGTGACAAGAATAGCAGATATGATTGACGGGGAGATTGCTTCCATGGTTCCCCAATGGAGGCTCAGGCATGGCATGGAGGATTCGATTAATTTTGCTGATCAAACTTTTTGTCAGAATTGTGCATCGAATCGGACATCATATGGATCTTTAATGGAGTATTTGACGACAGATTCTGCTGGAAAGAACTTGCAGGTTTATAAGTGCTGTAAAAATGGCTGTGCCACTACTCACGGCCGTTTCGAGGAGATTACCTTCCAAGCGACTGATGGCTCCGAGAATGATATGAAAGAGCCTGCTTTGAACGCGTCGAGCCAATCGAATTGTCTTAATTATCATGAGACTTTGGGAGGCCATGAATTTAGCTCAGCAAGCTGTGAACCAAACCATTCTGACGAAGAATATGAAGAAACAGATCGGCAAGTGTCAAAAATCAAAACAAGTGGAAGTTTTTACGGAGACTCAGTCGCACCCGAACTGTCTGGCAATTTCGAACAAGAAAGCCAGCAAAAACTTAGATGGCTAAAAGCAAATTTTCAGATGAAATTAAGGGCGCTTAGAGATCAGCATCTTAGTCATAATGCCGATAAAGTTTGCGGGAAGTTGCCCATTGCAGAGGACATGGCTGCTTCTAATGGCTTCTGCAATGCCTCCATCGCTTCTTCAAACTCCATTCATAGGACACTTTCCCTCCCTGTTGATGCTGTCCACTTATGA 1971 41.6 MNDRSHLEPDDSEFVEVDPTGRYGRYCEILGKGASKTVYRAFDEYEGIEVAWNQIKLYDFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTSNRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILKGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSFADRCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVKQFVEKCLATVSLRLSARELLNDPFLQIEDCEYEMRSLDCGFRDAGLTIRQSFFDLNGSKSTLCNGVSDDYNYYDASSEWGYFPAEVGHSGIELFERHDDGHYEDVDVSIKGKRRENGDIFLRLRITDKDGLIRNIYFPFDVEIDKALSVATEMVAELDIMDQDVTRIADMIDGEIASMVPQWRLRHGMEDSINFADQTFCQNCASNRTSYGSLMEYLTTDSAGKNLQVYKCCKNGCATTHGRFEEITFQATDGSENDMKEPALNASSQSNCLNYHETLGGHEFSSASCEPNHSDEEYEETDRQVSKIKTSGSFYGDSVAPELSGNFEQESQQKLRWLKANFQMKLRALRDQHLSHNADKVCGKLPIAEDMAASNGFCNASIASSNSIHRTLSLPVDAVHL 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16565278 16569037 + Bma001566.1 Bma01g01257 75774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01257 656 CDD STKc_WNK 22 281 - -
Bma01g01257 656 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Bma01g01257 656 Pfam Protein kinase domain 28 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01257 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Bma01g01257 656 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Bma01g01257 656 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 614 - -
Bma01g01257 656 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01257 656 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 614 - -
Bma01g01257 656 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01257 656 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 376 430 IPR024678 GO:0004674|GO:0005524
Bma01g01257 656 SUPERFAMILY Protein kinase-like (PK-like) 26 282 IPR011009 -
Bma01g01257 656 Gene3D - 357 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01257 Bma-Chr1:16565278 Bma03g00765 Bma-Chr3:7005179 3.15E-173 dispersed
Bma01g01255 Bma-Chr1:16356192 Bma01g01257 Bma-Chr1:16565278 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66278 PF00069 Pkinase 6.70E-50 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01257 K08867 - zju:107412273 892.108