Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01259 ATGGAGTTCAAGCTGTGCGACTCCTGCAAGGCGGCTAGGCCGACTCTCTTTTGCCGCGCTGACTCGGCCTTTCTGTGCGTTGGATGTGACTCTGAAATCCACGCTGCCAACAAGCTTGCCTCTCGCCACGCTCGTGTTTGGCTCTGCGAAGTCTGCGAGCAGGCACCGGCTCATGTCACCTGCAAGGCCGATGCAGCCTCTCTCTGCATCAGTTGCGACCGCGACATCCACTCTGCCAACCCCCTGGCTAGTCGTCACGAACGAATTCCAGTGACGCCCTTCTTTAACACCCCCAATTCGCTACCAACCGAATCAGTCTCCGCTGTCAACTTTCTCGACGACAGTTACTACTCCGACGTCGACGGAAATGCCGACGCCAGCAGGGAAGAGGCCGAGGCAGCTTCGTGGCTGCTCCCCAATCCCCATCCCAAAGATATCGGAAGCCCAGACCTTAGCTCGAGCCATGTAGCGTATCGGGAAACGTATCGGTATGTGGACCTTAATTACGGATCGATTAATCCGAAATCTGAAGCACAGGAGTTTACCAACTCGGGTGCGGATGGAGTAGTTCCCATTCAAGCCAAGGGTAACCAGAAACTTAACTGCTACGGCTTGGCCTATGGATTTGACCGTCATTGTCTGAGTCAGAGCGTATCGTCATCCTCGCACGAAGTGGGAGTGGTTCCTGATGGCAGTGCAATGGCCGAAACGTCGAATCCCAGCATGAAGCCGCACTCGATCAACACAACAACAGTGCAAGTTTCGGGGGCAGATAGGGAAGCGAGGGTGATGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTTGAGAAGACAATCCGGTATGCATCACGAAAGGCCTACGCAGAAACGAGGCCACGGATCAAAGGGAGGTTTGCCAAGCGCACCGAAGCGGATATGGACGCCGTATACGGTGTTGTGCCGTCGTTCTGA 951 54.78 MEFKLCDSCKAARPTLFCRADSAFLCVGCDSEIHAANKLASRHARVWLCEVCEQAPAHVTCKADAASLCISCDRDIHSANPLASRHERIPVTPFFNTPNSLPTESVSAVNFLDDSYYSDVDGNADASREEAEAASWLLPNPHPKDIGSPDLSSSHVAYRETYRYVDLNYGSINPKSEAQEFTNSGADGVVPIQAKGNQKLNCYGLAYGFDRHCLSQSVSSSSHEVGVVPDGSAMAETSNPSMKPHSINTTTVQVSGADREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEADMDAVYGVVPSF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16771404 16772494 + Bma001572.1 Bma01g01259 75776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01259 316 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 316 IPR045281 GO:0009909
Bma01g01259 316 ProSiteProfiles CCT domain profile. 259 301 IPR010402 GO:0005515
Bma01g01259 316 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 316 - -
Bma01g01259 316 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Bma01g01259 316 CDD Bbox1_BBX-like 5 48 - -
Bma01g01259 316 Pfam CCT motif 259 301 IPR010402 GO:0005515
Bma01g01259 316 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Bma01g01259 316 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Bma01g01259 316 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bma01g01259 316 CDD Bbox1_BBX-like 48 91 - -
Bma01g01259 316 SMART bboxneu5 49 91 IPR000315 GO:0008270
Bma01g01259 316 SMART bboxneu5 1 48 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01259 - - - csv:101208063 424.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01259 Bma-Chr1:16771404 Bma06g00932 Bma-Chr6:45146901 5.02E-86 dispersed
Bma14g01712 Bma-Chr14:36277748 Bma01g01259 Bma-Chr1:16771404 2.46E-08 dispersed
Bma15g00960 Bma-Chr15:36260262 Bma01g01259 Bma-Chr1:16771404 3.20E-08 dispersed
Bma01g01259 Bma-Chr1:16771404 Bma06g00924 Bma-Chr6:44829716 5.02E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g625 . . . . Bpe02g01272 . . . Cmo05g00340 Cmo12g00329 . Cma05g00338 . . Sed11g1127 Cpe07g00334 . Bhi04g00075 Tan02g2785 Cmetu03g0258 . Hepe10g0202 . Lcy13g1849 . . . . . . . Cone4ag1724 Cone7ag1644 . . . . . Cme03g01557 . . . . . . Bma01g01259 . . . . . Cma12g00377 . Car05g00282 Cpe11g00283 . . . . . . . . Cla08g01382 Cam08g1853 Cec08g1431 Cco08g1564 Clacu08g1548 . Cre08g1331 Lsi08g01266 . Chy03g01067 .
Vvi14g408 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01259 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00460 . 24 395 C2C2-CO-like Transcription Factor Family AT5G15850 52.3 2.0e-59 226.5
Bma02g00460 . 12 395 C2C2-CO-like Transcription Factor Family AT3G02380 53.2 7.5e-67 251.1
Bma01g01259 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 52.7 1.1e-60 230.7
Bma06g00924 BCT 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma06g00932 . 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 4.6e-78 288.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.3e-77 287.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00543 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 57.5 2.4e-54 209.5
Bma15g00960 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 6.9e-53 203.8
Bma06g00103 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT2G21320 59.6 1.2e-49 193.0
Bma15g00960 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 61.6 4.6e-55 211.1
Bma06g00103 CCT,ECH 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 80.7 2.2e-49 192.2
Bma12g00543 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 1.2e-55 213.4
Bma05g00152 BCT 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 6.1e-47 184.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56716 PF00643 zf-B_box 2.30E-06 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01259 Bma_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0