Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01259 ATGGAGTTCAAGCTGTGCGACTCCTGCAAGGCGGCTAGGCCGACTCTCTTTTGCCGCGCTGACTCGGCCTTTCTGTGCGTTGGATGTGACTCTGAAATCCACGCTGCCAACAAGCTTGCCTCTCGCCACGCTCGTGTTTGGCTCTGCGAAGTCTGCGAGCAGGCACCGGCTCATGTCACCTGCAAGGCCGATGCAGCCTCTCTCTGCATCAGTTGCGACCGCGACATCCACTCTGCCAACCCCCTGGCTAGTCGTCACGAACGAATTCCAGTGACGCCCTTCTTTAACACCCCCAATTCGCTACCAACCGAATCAGTCTCCGCTGTCAACTTTCTCGACGACAGTTACTACTCCGACGTCGACGGAAATGCCGACGCCAGCAGGGAAGAGGCCGAGGCAGCTTCGTGGCTGCTCCCCAATCCCCATCCCAAAGATATCGGAAGCCCAGACCTTAGCTCGAGCCATGTAGCGTATCGGGAAACGTATCGGTATGTGGACCTTAATTACGGATCGATTAATCCGAAATCTGAAGCACAGGAGTTTACCAACTCGGGTGCGGATGGAGTAGTTCCCATTCAAGCCAAGGGTAACCAGAAACTTAACTGCTACGGCTTGGCCTATGGATTTGACCGTCATTGTCTGAGTCAGAGCGTATCGTCATCCTCGCACGAAGTGGGAGTGGTTCCTGATGGCAGTGCAATGGCCGAAACGTCGAATCCCAGCATGAAGCCGCACTCGATCAACACAACAACAGTGCAAGTTTCGGGGGCAGATAGGGAAGCGAGGGTGATGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTTGAGAAGACAATCCGGTATGCATCACGAAAGGCCTACGCAGAAACGAGGCCACGGATCAAAGGGAGGTTTGCCAAGCGCACCGAAGCGGATATGGACGCCGTATACGGTGTTGTGCCGTCGTTCTGA 951 54.78 MEFKLCDSCKAARPTLFCRADSAFLCVGCDSEIHAANKLASRHARVWLCEVCEQAPAHVTCKADAASLCISCDRDIHSANPLASRHERIPVTPFFNTPNSLPTESVSAVNFLDDSYYSDVDGNADASREEAEAASWLLPNPHPKDIGSPDLSSSHVAYRETYRYVDLNYGSINPKSEAQEFTNSGADGVVPIQAKGNQKLNCYGLAYGFDRHCLSQSVSSSSHEVGVVPDGSAMAETSNPSMKPHSINTTTVQVSGADREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEADMDAVYGVVPSF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16771404 16772494 + Bma001572.1 Bma01g01259 75776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01259 316 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 316 IPR045281 GO:0009909
Bma01g01259 316 ProSiteProfiles CCT domain profile. 259 301 IPR010402 GO:0005515
Bma01g01259 316 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 316 - -
Bma01g01259 316 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Bma01g01259 316 CDD Bbox1_BBX-like 5 48 - -
Bma01g01259 316 Pfam CCT motif 259 301 IPR010402 GO:0005515
Bma01g01259 316 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Bma01g01259 316 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Bma01g01259 316 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bma01g01259 316 CDD Bbox1_BBX-like 48 91 - -
Bma01g01259 316 SMART bboxneu5 49 91 IPR000315 GO:0008270
Bma01g01259 316 SMART bboxneu5 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01259 Bma-Chr1:16771404 Bma06g00932 Bma-Chr6:45146901 5.02E-86 dispersed
Bma14g01712 Bma-Chr14:36277748 Bma01g01259 Bma-Chr1:16771404 2.46E-08 dispersed
Bma15g00960 Bma-Chr15:36260262 Bma01g01259 Bma-Chr1:16771404 3.20E-08 dispersed
Bma01g01259 Bma-Chr1:16771404 Bma06g00924 Bma-Chr6:44829716 5.02E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56716 PF00643 zf-B_box 2.30E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01259 - - csv:101208063 424.091