Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01260 | ATGGCAGACGTGATGCTGACGGGGGAGATTGAAGCCACCGCCGCTCGGCTCGGAATCGATCTCTCCCAAATCGATCTTGACTCCATTCGCCTCCCTCCTGGTGAAGACTTCGGCATCATTAGTGATGATGAGGATGTTTTGCAAGAGGAGAATCTGAAGTTCGATACTGGATTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGTGAAAAATTTGAGAAGCTTGAAGGTGTAATTTGCAAGATATACAGTCAAATTGGAATAATCAAGGAGGATGGTCTTTGGATGCCTGTTGATCCTGAGACACAAAAAACTTTAGGTTACTGCTTCATTGAGTACAATACCCCCCAGGAAGCTGAACTTGCCAAGGAGAAAACAAATGGATACAAACTCGACAGGGCACACATATTTGCTGTTAGCATGTTTGAAGATTTCGATAAATTCATGAAGGTTCCTGATGAGTGGGTTACTCCTGAAAGCATTCCATACTCTCCAGGGGAGAATCTTCAAAGTTGGCTGACAGATGAGAAAGCTCGCGATCAGTTTGTGATTCGTGCTGGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATATGAAGCCAGACCCTGTGTACAAACGTACATTTTGGACTGAAGGTTTTGTCCAATGGTCATCTTTGGGGACTTACCTGGCAACAGTTCACCGGCAAGGTGCTGCTGTTTGGGGTGGTGCCAGCACCTTTAATCGCTTAATGCGTTATGCTCATCCTCTGGTTAAACTGATTGACTTTTCACCTGGTGAGAAATATTTAGTAACTTACAGTAGTCATGAACCAAGCAATCCTAGAGATGCTAGTAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCTGATGAATTTGCTGTTGGAGGAACAGGAGCTGTCACAGGAGTTTCTTGGCCAGTTTTCAGATGGGGTGGAAAGAATGATAAATATTTTGCCAGGATTGGAAAAAATATAATCTCTGTCTATGAAACAGAAACTTTTTCACTGGTTGACAAGAGGTCTTTGAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCGACTGATCCAATTCTTGCACTTTTTGTTCCCGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTCCAAATTCCTAGTAAAGAGGAAATTAGGCAGAAAAATCTTTTTAGTGTTAGTGATTGCAAAATGTATTGGCAAAGCAATGGAGATTATCTTGCTGTGAAGGTTGATCGTTATACAAAGACAAAAAAGAGCACATACACTGGATTTGAGCTTTTTCGCATCAAAGAACGTGACATTCCAATTGAGGTTTTGGAACTTGAAAACAAGAATGATAAAATTATTGCTTTTGCTTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCACGGTGATAACCCCAGGCCAGACATAAGTTTTTACTCAATGCGAACTGCTCACAATACTGGTCGAGTTTCGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTTTTCTGGTCACCAGCTGGGCGTTTTATTATTCTTGCTGGACTGAAGGGTCTCAATGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACAGCTGAGCATTTCATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTATGTTGCAACTGCTGTGACATCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGAAAGCTACTTTATAGAATATTGAAGGATCATTTCTATCAGTTCTCGTGGCGGCCAAGGCCAGTATCGGTGTTATCAGCTGAGAAAGAGGAGGAGATAGCTAAGAACTTGAAGAAGTACAGCAAGAAGTACGAAGCAGAAGACCAAGACGTGTCAATGCTATTAAATGAGCAGGATCGGGAGAAACGGAAGAAGTTGAAGGATGAATGGGATAAATGGGTGGGCGAGTGGAAAAGGCTGCATGAAGAAGAAAAACTGTGGAGGCAGAAACTAAGGGATGGCGAAGCCAGTGATGAAGAAGAAGAAGAATACGAAGCCAAAGAGGTAGAAGTTGAGGAATTCTTGATGTTGTGGAGGAGGTTGTTGATCTTGAAGAGTAATTTTGTTAGTCACTTTGTCGTTGTTGACTATAAATTTTTGGTTTCCTGTTTGTCGCCTGTTTCTGAACATTGTAGGACAGTCGTTGAGGAATGGAAAGTACAACTTGAACTTAAACCTTTTCCATGGCAACCAACAAAAGAATGTCTACCAAGTGATGTGATCAGATTGAGGAGTTTATTCATTCAAACAAGAACATTTTTGCAGAAGATGCAATTCCAAGAACAAAATTAA | 2382 | 41.77 | MADVMLTGEIEATAARLGIDLSQIDLDSIRLPPGEDFGIISDDEDVLQEENLKFDTGFGNIIVVDNLPVVPREKFEKLEGVICKIYSQIGIIKEDGLWMPVDPETQKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVSMFEDFDKFMKVPDEWVTPESIPYSPGENLQSWLTDEKARDQFVIRAGNDTEVLWNDARHMKPDPVYKRTFWTEGFVQWSSLGTYLATVHRQGAAVWGGASTFNRLMRYAHPLVKLIDFSPGEKYLVTYSSHEPSNPRDASRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVTGVSWPVFRWGGKNDKYFARIGKNIISVYETETFSLVDKRSLKVDNVVDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEEIRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRTAHNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFSWRPRPVSVLSAEKEEEIAKNLKKYSKKYEAEDQDVSMLLNEQDREKRKKLKDEWDKWVGEWKRLHEEEKLWRQKLRDGEASDEEEEEYEAKEVEVEEFLMLWRRLLILKSNFVSHFVVVDYKFLVSCLSPVSEHCRTVVEEWKVQLELKPFPWQPTKECLPSDVIRLRSLFIQTRTFLQKMQFQEQN | 793 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16779422 | 16783642 | - | Bma001573.1 | Bma01g01260 | 75777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01260 | 793 | SMART | rrm1_1 | 61 | 142 | IPR000504 | GO:0003723 | |
Bma01g01260 | 793 | SUPERFAMILY | DPP6 N-terminal domain-like | 219 | 599 | - | - | |
Bma01g01260 | 793 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 147 | IPR000504 | GO:0003723 | |
Bma01g01260 | 793 | SUPERFAMILY | RNA-binding domain, RBD | 59 | 139 | IPR035979 | GO:0003676 | |
Bma01g01260 | 793 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 5 | 704 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Bma01g01260 | 793 | Coils | Coil | 617 | 647 | - | - | |
Bma01g01260 | 793 | Gene3D | - | 59 | 143 | IPR012677 | - | |
Bma01g01260 | 793 | Gene3D | - | 182 | 381 | IPR015943 | GO:0005515 | |
Bma01g01260 | 793 | Pfam | Eukaryotic translation initiation factor eIF2A | 405 | 605 | IPR013979 | - | |
Bma01g01260 | 793 | PANTHER | BNACNNG51870D PROTEIN | 5 | 704 | - | - | |
Bma01g01260 | 793 | CDD | RRM_eIF3B | 59 | 142 | IPR034363 | - | |
Bma01g01260 | 793 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 85 | 136 | IPR000504 | GO:0003723 | |
Bma01g01260 | 793 | PIRSF | Transl_init_eIF3b | 6 | 711 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Bma01g01260 | 793 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 48 | 706 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Bma01g01260 | 793 | Gene3D | - | 415 | 631 | IPR015943 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00782 | Bma-Chr1:7169331 | Bma01g01260 | Bma-Chr1:16779422 | 0 | dispersed | |
Bma01g01260 | Bma-Chr1:16779422 | Bma15g00387 | Bma-Chr15:4303546 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01260 | K03253 | - | zju:107419937 | 1283.09 |