Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01260 ATGGCAGACGTGATGCTGACGGGGGAGATTGAAGCCACCGCCGCTCGGCTCGGAATCGATCTCTCCCAAATCGATCTTGACTCCATTCGCCTCCCTCCTGGTGAAGACTTCGGCATCATTAGTGATGATGAGGATGTTTTGCAAGAGGAGAATCTGAAGTTCGATACTGGATTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGTGAAAAATTTGAGAAGCTTGAAGGTGTAATTTGCAAGATATACAGTCAAATTGGAATAATCAAGGAGGATGGTCTTTGGATGCCTGTTGATCCTGAGACACAAAAAACTTTAGGTTACTGCTTCATTGAGTACAATACCCCCCAGGAAGCTGAACTTGCCAAGGAGAAAACAAATGGATACAAACTCGACAGGGCACACATATTTGCTGTTAGCATGTTTGAAGATTTCGATAAATTCATGAAGGTTCCTGATGAGTGGGTTACTCCTGAAAGCATTCCATACTCTCCAGGGGAGAATCTTCAAAGTTGGCTGACAGATGAGAAAGCTCGCGATCAGTTTGTGATTCGTGCTGGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATATGAAGCCAGACCCTGTGTACAAACGTACATTTTGGACTGAAGGTTTTGTCCAATGGTCATCTTTGGGGACTTACCTGGCAACAGTTCACCGGCAAGGTGCTGCTGTTTGGGGTGGTGCCAGCACCTTTAATCGCTTAATGCGTTATGCTCATCCTCTGGTTAAACTGATTGACTTTTCACCTGGTGAGAAATATTTAGTAACTTACAGTAGTCATGAACCAAGCAATCCTAGAGATGCTAGTAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCTGATGAATTTGCTGTTGGAGGAACAGGAGCTGTCACAGGAGTTTCTTGGCCAGTTTTCAGATGGGGTGGAAAGAATGATAAATATTTTGCCAGGATTGGAAAAAATATAATCTCTGTCTATGAAACAGAAACTTTTTCACTGGTTGACAAGAGGTCTTTGAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCGACTGATCCAATTCTTGCACTTTTTGTTCCCGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTCCAAATTCCTAGTAAAGAGGAAATTAGGCAGAAAAATCTTTTTAGTGTTAGTGATTGCAAAATGTATTGGCAAAGCAATGGAGATTATCTTGCTGTGAAGGTTGATCGTTATACAAAGACAAAAAAGAGCACATACACTGGATTTGAGCTTTTTCGCATCAAAGAACGTGACATTCCAATTGAGGTTTTGGAACTTGAAAACAAGAATGATAAAATTATTGCTTTTGCTTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCACGGTGATAACCCCAGGCCAGACATAAGTTTTTACTCAATGCGAACTGCTCACAATACTGGTCGAGTTTCGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTTTTCTGGTCACCAGCTGGGCGTTTTATTATTCTTGCTGGACTGAAGGGTCTCAATGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACAGCTGAGCATTTCATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTATGTTGCAACTGCTGTGACATCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGAAAGCTACTTTATAGAATATTGAAGGATCATTTCTATCAGTTCTCGTGGCGGCCAAGGCCAGTATCGGTGTTATCAGCTGAGAAAGAGGAGGAGATAGCTAAGAACTTGAAGAAGTACAGCAAGAAGTACGAAGCAGAAGACCAAGACGTGTCAATGCTATTAAATGAGCAGGATCGGGAGAAACGGAAGAAGTTGAAGGATGAATGGGATAAATGGGTGGGCGAGTGGAAAAGGCTGCATGAAGAAGAAAAACTGTGGAGGCAGAAACTAAGGGATGGCGAAGCCAGTGATGAAGAAGAAGAAGAATACGAAGCCAAAGAGGTAGAAGTTGAGGAATTCTTGATGTTGTGGAGGAGGTTGTTGATCTTGAAGAGTAATTTTGTTAGTCACTTTGTCGTTGTTGACTATAAATTTTTGGTTTCCTGTTTGTCGCCTGTTTCTGAACATTGTAGGACAGTCGTTGAGGAATGGAAAGTACAACTTGAACTTAAACCTTTTCCATGGCAACCAACAAAAGAATGTCTACCAAGTGATGTGATCAGATTGAGGAGTTTATTCATTCAAACAAGAACATTTTTGCAGAAGATGCAATTCCAAGAACAAAATTAA 2382 41.77 MADVMLTGEIEATAARLGIDLSQIDLDSIRLPPGEDFGIISDDEDVLQEENLKFDTGFGNIIVVDNLPVVPREKFEKLEGVICKIYSQIGIIKEDGLWMPVDPETQKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVSMFEDFDKFMKVPDEWVTPESIPYSPGENLQSWLTDEKARDQFVIRAGNDTEVLWNDARHMKPDPVYKRTFWTEGFVQWSSLGTYLATVHRQGAAVWGGASTFNRLMRYAHPLVKLIDFSPGEKYLVTYSSHEPSNPRDASRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVTGVSWPVFRWGGKNDKYFARIGKNIISVYETETFSLVDKRSLKVDNVVDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEEIRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRTAHNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFSWRPRPVSVLSAEKEEEIAKNLKKYSKKYEAEDQDVSMLLNEQDREKRKKLKDEWDKWVGEWKRLHEEEKLWRQKLRDGEASDEEEEEYEAKEVEVEEFLMLWRRLLILKSNFVSHFVVVDYKFLVSCLSPVSEHCRTVVEEWKVQLELKPFPWQPTKECLPSDVIRLRSLFIQTRTFLQKMQFQEQN 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16779422 16783642 - Bma001573.1 Bma01g01260 75777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01260 793 SMART rrm1_1 61 142 IPR000504 GO:0003723
Bma01g01260 793 SUPERFAMILY DPP6 N-terminal domain-like 219 599 - -
Bma01g01260 793 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Bma01g01260 793 SUPERFAMILY RNA-binding domain, RBD 59 139 IPR035979 GO:0003676
Bma01g01260 793 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 704 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bma01g01260 793 Coils Coil 617 647 - -
Bma01g01260 793 Gene3D - 59 143 IPR012677 -
Bma01g01260 793 Gene3D - 182 381 IPR015943 GO:0005515
Bma01g01260 793 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
Bma01g01260 793 PANTHER BNACNNG51870D PROTEIN 5 704 - -
Bma01g01260 793 CDD RRM_eIF3B 59 142 IPR034363 -
Bma01g01260 793 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 136 IPR000504 GO:0003723
Bma01g01260 793 PIRSF Transl_init_eIF3b 6 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bma01g01260 793 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 706 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bma01g01260 793 Gene3D - 415 631 IPR015943 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00782 Bma-Chr1:7169331 Bma01g01260 Bma-Chr1:16779422 0 dispersed
Bma01g01260 Bma-Chr1:16779422 Bma15g00387 Bma-Chr15:4303546 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01260 K03253 - zju:107419937 1283.09