Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01263 ATGTCTGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGTGCCTCCAAGACCTACCCTCAGCAAGCCGGTACCATTCGTAAAAACGGTTACATCGTCATCAAGAACCGCCCCTGCAAGGTTGTCGAGGTTTCTACTTCAAAGACTGGGAAGCATGGCCATGCCAAGTGTCACTTTGTAGGGATTGATATTTTCACTGCAAAGAAACTTGAGGATATTGTTCCATCTTCCCACAATTGTGATGTTCCCCATGTTAATCGCACGGATTATCAACTGATTGACATATCTGAAGATGGATTTGTAAGTCTCTTAACTGACAATGGCAACACCAAGGATGACTTGAAGCTTCCCACGGATGATAGTTTACTCAGCCAGATTTCATGGTTGTTCTTCTTTTTGCCGAGACTCTGCCCCAAAAGAACACCACAAAAAAAATTATTTATCTTACCCCATTTGGTAGGCTTTTTATTGACTACAAATTACGTATGTCGTCAGATTAAAGACGGATTTGCTGAAGGAAAGGACCTTGTGGTGTCGGTTATGTCAGCAATGGGGGAGGAACAAATCAATGCTCTCAAGGACATTGGACCGAAGAACTAA 603 44.11 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDDSLLSQISWLFFFLPRLCPKRTPQKKLFILPHLVGFLLTTNYVCRQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17081543 17083284 - Bma001578.2 Bma01g01263 75780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01263 200 CDD S1_eIF5A 86 196 - -
Bma01g01263 200 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 129 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma01g01263 200 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 162 194 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma01g01263 200 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Bma01g01263 200 PANTHER BNAA07G09420D PROTEIN 167 196 - -
Bma01g01263 200 SUPERFAMILY Nucleic acid-binding proteins 86 131 IPR012340 -
Bma01g01263 200 SMART eIF_5a_2 85 194 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma01g01263 200 Gene3D - 1 85 IPR014722 -
Bma01g01263 200 Gene3D - 86 132 IPR012340 -
Bma01g01263 200 SUPERFAMILY Nucleic acid-binding proteins 160 196 IPR012340 -
Bma01g01263 200 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Bma01g01263 200 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma01g01263 200 TIGRFAM eIF_5A: translation elongation factor IF5A 17 120 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma01g01263 200 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g01263 200 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 167 196 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma01g01263 200 PIRSF Transl_init_eIF5A 1 131 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma01g01263 200 PIRSF Transl_init_eIF5A 157 197 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma01g01263 200 Gene3D - 157 198 IPR012340 -
Bma01g01263 200 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01263 Bma04g00091 CCT
Bma01g02174 Bma01g01263 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01263 Bma-Chr1:17081543 Bma14g01659 Bma-Chr14:35180006 1.72E-101 dispersed
Bma01g01263 Bma-Chr1:17081543 Bma01g02174 Bma-Chr1:78661310 1.70E-99 wgd
Bma01g01263 Bma-Chr1:17081543 Bma04g00091 Bma-Chr4:759090 3.92E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01263 K03263 K02180 egr:104436092 296.589