Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01263 | ATGTCTGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGTGCCTCCAAGACCTACCCTCAGCAAGCCGGTACCATTCGTAAAAACGGTTACATCGTCATCAAGAACCGCCCCTGCAAGGTTGTCGAGGTTTCTACTTCAAAGACTGGGAAGCATGGCCATGCCAAGTGTCACTTTGTAGGGATTGATATTTTCACTGCAAAGAAACTTGAGGATATTGTTCCATCTTCCCACAATTGTGATGTTCCCCATGTTAATCGCACGGATTATCAACTGATTGACATATCTGAAGATGGATTTGTAAGTCTCTTAACTGACAATGGCAACACCAAGGATGACTTGAAGCTTCCCACGGATGATAGTTTACTCAGCCAGATTTCATGGTTGTTCTTCTTTTTGCCGAGACTCTGCCCCAAAAGAACACCACAAAAAAAATTATTTATCTTACCCCATTTGGTAGGCTTTTTATTGACTACAAATTACGTATGTCGTCAGATTAAAGACGGATTTGCTGAAGGAAAGGACCTTGTGGTGTCGGTTATGTCAGCAATGGGGGAGGAACAAATCAATGCTCTCAAGGACATTGGACCGAAGAACTAA | 603 | 44.11 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDDSLLSQISWLFFFLPRLCPKRTPQKKLFILPHLVGFLLTTNYVCRQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17081543 | 17083284 | - | Bma001578.2 | Bma01g01263 | 75780 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01263 | 200 | CDD | S1_eIF5A | 86 | 196 | - | - | |
Bma01g01263 | 200 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 129 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bma01g01263 | 200 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 162 | 194 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bma01g01263 | 200 | PANTHER | BNAA07G09420D PROTEIN | 1 | 123 | - | - | |
Bma01g01263 | 200 | PANTHER | BNAA07G09420D PROTEIN | 167 | 196 | - | - | |
Bma01g01263 | 200 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 131 | IPR012340 | - | |
Bma01g01263 | 200 | SMART | eIF_5a_2 | 85 | 194 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bma01g01263 | 200 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Bma01g01263 | 200 | Gene3D | - | 86 | 132 | IPR012340 | - | |
Bma01g01263 | 200 | SUPERFAMILY | Nucleic acid-binding proteins | 160 | 196 | IPR012340 | - | |
Bma01g01263 | 200 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Bma01g01263 | 200 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 123 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma01g01263 | 200 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 120 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma01g01263 | 200 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Bma01g01263 | 200 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 167 | 196 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma01g01263 | 200 | PIRSF | Transl_init_eIF5A | 1 | 131 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma01g01263 | 200 | PIRSF | Transl_init_eIF5A | 157 | 197 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bma01g01263 | 200 | Gene3D | - | 157 | 198 | IPR012340 | - | |
Bma01g01263 | 200 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g01263 | Bma04g00091 | CCT | |
Bma01g02174 | Bma01g01263 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01263 | Bma-Chr1:17081543 | Bma14g01659 | Bma-Chr14:35180006 | 1.72E-101 | dispersed | |
Bma01g01263 | Bma-Chr1:17081543 | Bma01g02174 | Bma-Chr1:78661310 | 1.70E-99 | wgd | |
Bma01g01263 | Bma-Chr1:17081543 | Bma04g00091 | Bma-Chr4:759090 | 3.92E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01263 | K03263 | K02180 | egr:104436092 | 296.589 |