Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01264 ATGATGAGCGTCATGTACGAAAATTACAGGGTCTTGCAGACCGAAATGAGGGATTTGATGAACCAGGAATCAAGAAAACGAAAGGCGGAGGAAGAAGAACACAGTAACAACTGGAGTAGGAGCGATGAAGAGTGCTATAAAACGAGAAGAGCAAACAGCAAACCCAACGTCAAAACTAAGAGAACTCTAATTCAGACCTACGCTTCCGATTCTAATCTAATTGTAAAAGATGGTTATCAATGGAGGAAATATGGGCAAAAGGTTACAAGAGATAATCCTTCTCCCAGAGCTTATTACAAGTGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTTCAAAGAAGTGCAGAAGACCCATCAATATTAGTGGCCACATATGAAGGAGAGCATAATCACATAAACCCTTCGACAATAGAGTTTGTTTTAGCATCAGACCAAGTGATGAACCTTGCTCCTTCGCAGCCATTCGCGTCTTCAACGAGAACTTCACCTCCTACAGTGACACTGGATTTAATCCAATCAGGGTTTAGCGGAGAAAGTGGAGAGAAGGCAGAAGCGATTAATCAGTCTTTGGTCGGGCAGATGGCTTCTTCTCTGACCAAGAACCCTAACTTCGCTGCAGCTCTTGCTGCTGCCATTTCAGCAAGCGTTTTAAACCATGCTCCTGCGTAG 675 43.85 MMSVMYENYRVLQTEMRDLMNQESRKRKAEEEEHSNNWSRSDEECYKTRRANSKPNVKTKRTLIQTYASDSNLIVKDGYQWRKYGQKVTRDNPSPRAYYKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHINPSTIEFVLASDQVMNLAPSQPFASSTRTSPPTVTLDLIQSGFSGESGEKAEAINQSLVGQMASSLTKNPNFAAALAAAISASVLNHAPA 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17133626 17134481 - Bma001579.1 Bma01g01264 75781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01264 224 ProSiteProfiles WRKY domain profile. 70 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01264 224 SUPERFAMILY WRKY DNA-binding domain 72 134 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01264 224 MobiDBLite consensus disorder prediction 21 51 - -
Bma01g01264 224 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01264 224 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 220 IPR044810 GO:0003700
Bma01g01264 224 Gene3D WRKY domain 58 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g01264 224 SMART WRKY_cls 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g01264 224 Coils Coil 12 32 - -
Bma01g01264 224 MobiDBLite consensus disorder prediction 21 53 - -
Bma01g01264 224 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 1 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01264 Bma-Chr1:17133626 Bma10g00854 Bma-Chr10:15358132 2.35E-59 dispersed
Bma01g01264 Bma-Chr1:17133626 Bma01g02170 Bma-Chr1:78641600 7.75E-47 wgd
Bma01g01264 Bma-Chr1:17133626 Bma04g00090 Bma-Chr4:740743 1.26E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56717 PF03106 WRKY 1.20E-24 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01264 - - pop:7465416 223.787