Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01268 ATGCTGTCTAAGATGCTGCTCCTCTCCAAGCAAAACTACTCCGGTACGGTCCCCGTTTACCTCAACGTCTATGATCTAACCCCCATTAATGGCTACGCCTACTGGCTCGGCCTTGGTGTCTACCATTCTGGCGTTCAAGTACATGGAGTTGAATATGCATTTGGAGCCCACGAACAGTCCACCACCGGAATCTTTGAGGTGGAACCAAAGCACTGCCCTGGTTTCGCTTTCAGAAAATCTATTTTGATCGGAACAACCAATCTCGGCTCCGAAGACGTCGGATCGTTCATGGAAAAGCTCGCGGAAGATTATTCTGGAAACGCATACCATCTCATAACAAACAACTGCAACCATTTCTGCGGCGACGTTTGCGTTCGATTGACAGGGAAACCCATCCCCAGCTGGGTCAATCGTCTTGCTCGCCTAGGCTCTCTGTGCAACTGCGTTCTTCCCGCTGGATTGAACGAAACCAAAGTCGGAGACGTGAGATTGGAAGATAAAGGATGCCAAAGAGATAAGAAGAAATTGAGAAGCCATTCAAGTAGGTATGCATCTTCTTCGGATATTTCATCTCTTGCTACCTCGGTCCGAACCAGTAGACAAAGACGCTGTCTTCCCAGGTCTTCCTCCCTGATTCATTCTGCTTCAACTTCAAGCTTAGCTTTAAAGCTGTAA 675 48.0 MLSKMLLLSKQNYSGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEQSTTGIFEVEPKHCPGFAFRKSILIGTTNLGSEDVGSFMEKLAEDYSGNAYHLITNNCNHFCGDVCVRLTGKPIPSWVNRLARLGSLCNCVLPAGLNETKVGDVRLEDKGCQRDKKKLRSHSSRYASSSDISSLATSVRTSRQRRCLPRSSSLIHSASTSSLALKL 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17151759 17152620 + Bma001583.1 Bma01g01268 75785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01268 224 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Bma01g01268 224 Gene3D PPPDE domains 13 162 IPR042266 -
Bma01g01268 224 PANTHER F23A5.4 PROTEIN 10 217 - -
Bma01g01268 224 PANTHER DESUMOYLATING ISOPEPTIDASE 10 217 IPR008580 GO:0008233
Bma01g01268 224 Pfam PPPDE putative peptidase domain 18 151 IPR008580 GO:0008233
Bma01g01268 224 SMART DUF862_2a 17 155 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01268 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - pvy:116114787 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00768 Bma-Chr1:7089176 Bma01g01268 Bma-Chr1:17151759 5.18E-74 dispersed
Bma01g01268 Bma-Chr1:17151759 Bma10g00857 Bma-Chr10:15411134 2.40E-76 dispersed
Bma01g01268 Bma-Chr1:17151759 Bma13g00684 Bma-Chr13:18484862 4.13E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01268 Bma_Chr01 FPKM 5.765941 7.253265 9.780917 11.830709 157.320236 175.873611 165.90416 5.801321 5.925421 5.936831