Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01270 ATGGACGCACCGCAGAGGCGATACCGAGGCGTCAGACAGAGGCATTGGGGCTCCTGGGTCTCCGAAATTCGCCATCCAATACTGAAGATTAGGATTTGGGTGGGGACGTTTGAAACGGCAGAAGATGCAGCGAGAGCCTACGACGAAGCAGCGAGGTTCATGTGCGGACCCAGGGCTCGAACCAACTTCCCTTACGACCCAAATGCTTCTTCCAAGCTTCTTGGTGCAACTTTGACAGCCAAGCTTCACCGCTGCTACATGGCTTCCCTGCAAGTCAATAACCAAAAGATGCAGCCACTAGAAAAAGTCAAATCGACGAAACACAAGGCCAGGGCTGCAGGGCCGGAGGGGAATGGGAAGGGGAAGAAAGTGAAATTGGAACATAGTGTTGAAGAGGAGGAGATAGAGCAAATGATAGAGGAGCTTCTAGATTATGGGTCTATGGAGCTTTGTATGTGA 459 51.42 MDAPQRRYRGVRQRHWGSWVSEIRHPILKIRIWVGTFETAEDAARAYDEAARFMCGPRARTNFPYDPNASSKLLGATLTAKLHRCYMASLQVNNQKMQPLEKVKSTKHKARAAGPEGNGKGKKVKLEHSVEEEEIEQMIEELLDYGSMELCM 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17156055 17156602 - Bma001585.1 Bma01g01270 75787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01270 152 CDD AP2 7 66 IPR001471 GO:0003700|GO:0006355
Bma01g01270 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 127 151 - -
Bma01g01270 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 120 - -
Bma01g01270 152 MobiDBLite consensus disorder prediction 105 128 - -
Bma01g01270 152 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Bma01g01270 152 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Bma01g01270 152 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bma01g01270 152 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 127 151 - -
Bma01g01270 152 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 120 - -
Bma01g01270 152 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bma01g01270 152 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bma01g01270 152 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bma01g01270 152 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01270 Bma-Chr1:17156055 Bma09g00886 Bma-Chr9:48133704 7.42E-55 dispersed
Bma01g01270 Bma-Chr1:17156055 Bma06g01066 Bma-Chr6:47475190 9.37E-30 transposed
Bma01g01270 Bma-Chr1:17156055 Bma06g01078 Bma-Chr6:47608439 9.81E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56718 PF00847 AP2 4.40E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01270 - - csin:114275420 183.726