Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01275 ATGGCGCCGAGCACGGTACGCAAAGCGATCGGGGCTGTTAAGGATCAGACGAGTATTGGGATCGCTAAGGTCTCTAGCAACTTGGCGCCCGAACTGGAAGTAGCCATTGTGAAGGCGACGAGCCATGACGACGATCCTGCGAGCGAGAAGTACTTCCGAGAAATACTGAGCCTCACCTCCTACTCTCGCGGATACGTTCAAGCTTGCGTTTCTTCCATATCGAAGCGTCTGGGAAAGACACGAGACTGGATTGTTGCTCTAAAGGCGCTCATGCTTGTGCACCGGCTGTTGAACGACGGGGACCCAGCCTTCCGTCAGGAGATGTTATACGCCACGAGGAGGGGTACGAGGCTTCTCAATTTGTCGGATTTTCGGGACAAGGCCCATTCGAGCTCATGGGATCATTCCGCTTTTGTCAGAACGTACGCCATGTATTTGGATCAACGCCTCGAAATGATGTTGTTCGATAGAAAAAGTGGAAGTGTTAGAGGCGCCGTCGGTGGGGATGAGAGACTGGAAGGCAGAGATAATTTCAGGTCTTCTCCGGAGAGGCCGTACGATTACGACTACGGTGAGTTCAGAGGCGAGGTTCAGTATGGGAATAATGGAGGAATGAGGAGGGCGAGATGTTTTAGTGATATGGGCGAAACAGTGGGGAGAGAAGGACGTGTAGAGAAAGATAGAAGGGCGGCGACTCCATTGAGAGAAATGAAGCCGGAGAGAATTTTTGAGAAGATGGGTCATTTGCAGAGGCTGATGGACAGATTCCTTTCCTGTCACCCAACAGGTTTAGCGAAGAATTGCAGATTGATTTTGATTGCCTTGCACCCAGCGGTGAGGGAGAGCTTCCAGTTGTACGCCGAAATCTGCGAGGTTCTGGCTGTTCTGCTCGATAAATTTTTTGACATGGAGTACGCCGATTGTGTTAAAACCTTTGATGCGTACGCAAGTGCAGCAAAACAAATTGACGAGCTTGTTGGTTTCTATGTCTGGTGTAAAGACAAAGGAGTGGCAAGATTTTCCGAGTATCCGGAGGTGCAGAGGATAACCAGTAAGCTTTTGGAGACATTGGAGGAGTTTGTGAGGGACGCAGCAAACCGACCCAAAACTCCGAATGTGAGGGAGGAGTCCCAGCCTGATGTTCGAGAAGAAGAGCCTGAGCCTGTACAGAACATGAACGAGATAAAGGCTCTGCCGGCGCCAGACAACTACACTCCCCCTCCACCGGAGCCTGTGCCCGAACCCAAGCCTCAGATAGTGGAAGATTTGGTGAACTTAAGAGATGACACAGTCAGTGCAGATGATCAGGGCAATCGTTTAGCCTTGGCTTTATTTGCAGGCCTGCCAGCCAACAACGGGAATGGATCTTGGGAAGCTTTCCCGGAAAATGGCCAGTCTGAAGTGACATCTGCATGGCAGACGCGGGCTGCGGAACCGGGCAATGCGGATTGGGAACTAGCTTTGGTCGAGACTGCCAGCAATTTAGCAAAGCAGAAAGCAGCACTTGGCGGTGGGCTGGATCCGCTGTTATTGAACGGAATGTATGATCAGGGGATGGTTAGCCAGCATACTAGCACGGCCAAACTAACCGGCGGAAGTGCTAGTAGTGTAGCATTGTCAGGCCCCGGAAAGACAACCACTCCAGTTCTGGCTCTTCCAGCCCCAGATGGAACAGTTGACACCTACAATCAGGACCCTTTTGCTGCGTCATTAAGCATTCCACCTCCTTCTTACGTACAAATGGCTGACATGGAGAAGAAACAAACTTTTCTGGTGCAAGAACAGCATCTTTGGCGGCAATACGCCAGAGATGGAATGCAAGGTCAATCTAGCTTGGCCAAACTTAGCAGCGGCACAAACTACTACCCCTCCGGTCCTGTCCCGGTGATACCTTACGGGATGCCTCTGGTCAACAGTATTGGATTGGCACATTCTACTTGTTACTATGCTTCCTATTAA 1959 50.89 MAPSTVRKAIGAVKDQTSIGIAKVSSNLAPELEVAIVKATSHDDDPASEKYFREILSLTSYSRGYVQACVSSISKRLGKTRDWIVALKALMLVHRLLNDGDPAFRQEMLYATRRGTRLLNLSDFRDKAHSSSWDHSAFVRTYAMYLDQRLEMMLFDRKSGSVRGAVGGDERLEGRDNFRSSPERPYDYDYGEFRGEVQYGNNGGMRRARCFSDMGETVGREGRVEKDRRAATPLREMKPERIFEKMGHLQRLMDRFLSCHPTGLAKNCRLILIALHPAVRESFQLYAEICEVLAVLLDKFFDMEYADCVKTFDAYASAAKQIDELVGFYVWCKDKGVARFSEYPEVQRITSKLLETLEEFVRDAANRPKTPNVREESQPDVREEEPEPVQNMNEIKALPAPDNYTPPPPEPVPEPKPQIVEDLVNLRDDTVSADDQGNRLALALFAGLPANNGNGSWEAFPENGQSEVTSAWQTRAAEPGNADWELALVETASNLAKQKAALGGGLDPLLLNGMYDQGMVSQHTSTAKLTGGSASSVALSGPGKTTTPVLALPAPDGTVDTYNQDPFAASLSIPPPSYVQMADMEKKQTFLVQEQHLWRQYARDGMQGQSSLAKLSSGTNYYPSGPVPVIPYGMPLVNSIGLAHSTCYYASY 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17282265 17284223 + Bma001591.1 Bma01g01275 75792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01275 652 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Bma01g01275 652 MobiDBLite consensus disorder prediction 365 390 - -
Bma01g01275 652 MobiDBLite consensus disorder prediction 365 417 - -
Bma01g01275 652 Gene3D - 2 156 IPR008942 -
Bma01g01275 652 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 626 IPR045192 GO:0048268|GO:0072583
Bma01g01275 652 CDD ANTH_N_AP180_plant 32 151 - -
Bma01g01275 652 PANTHER ENTH/ANTH/VHS SUPERFAMILY PROTEIN-RELATED 1 626 - -
Bma01g01275 652 Pfam ANTH domain 31 153 IPR011417 GO:0005543
Bma01g01275 652 Pfam ANTH domain 206 363 IPR011417 GO:0005543
Bma01g01275 652 Gene3D ANTH domain 223 377 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Bma01g01275 652 SMART enth_2 30 163 IPR013809 -
Bma01g01275 652 MobiDBLite consensus disorder prediction 401 416 - -
Bma01g01275 652 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Bma01g01275 652 SUPERFAMILY GAT-like domain 233 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01275 - - - tcc:18587782 971.844
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01275 Bma04g00069 CCT
Bma01g01275 Bma02g00022 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01275 Bma-Chr1:17282265 Bma07g00620 Bma-Chr7:9392397 0 dispersed
Bma01g01275 Bma-Chr1:17282265 Bma02g00022 Bma-Chr2:291101 0 wgd
Bma01g01275 Bma-Chr1:17282265 Bma04g00069 Bma-Chr4:603623 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01275 Bma_Chr01 FPKM 6.213789 7.090656 2.870526 2.040145 11.737702 13.534441 11.791138 0.298363 0.715441 0.619541