Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01276 ATGAGAAAGGAGAGTCGTAAGACCGTCCCCGAAGAAGACGGGGTTGTTTCTTCAGCATCTCTCGTTGCAAATTCATGGCGAATATATAACAAAGACAAAGTCTTGCTCTGGCAATTCATCTTCTCCACCACCAATTACACAAACCTTACTTCCATGGCGGTCTTAGATAGTAATGGGATGATTAGTTTCCATTATCTTCCAAAAGGAGGGCCCAGTATAGATTCAGCTACGAAAATACCTGAAGATCGGTGCAGCCTACCTGTATCTTGTGAAGCGTACTTTGTTTGTTCTACGGGCTCAAATTGTAAGTGTCTCTCTGTTCTCAGCCCCCGATCAAATTGCCAAACTGGGATTGTTTCTCCTTGTAGTTCATCGCCGAGTAACATGCAGCTTGAGGATGCTGGAAATGGGCTCAATTACTTTGCTCTTGAGTTTCTTCAGCCCTTCTCTAAAACAGATTTGGATGGCTGCAAATCCTCTTGCATTTCCAACTGTTCCTGTCTAGCTTTGTTCTTCCAATCCAGTTCTGCAAGTTGTTTCTTGCTTGATAGAGTCGGTAGCTTTCGGGGCTCCACTGGTGGGTCTGATTATGTTTCATACATCAAGGTCTTGGGTGAAGAGAAGAATAGTGGGGATGACGGAGGAGATGGAAAGGGCCAGAAACACCACACTTTAGCTGTTGTGGTGATTGCTATATCCACAGTCGTCGCAGTTTCTGGTTTACTCTATTTCAGTTACAGGTACGTGAAGAAGAAGAAGAAGAAGCAGTTATTGCCGGAGTCTCAGGATGGAAGCTCGGAAGACGATAAATTCTTCGAGGGCTTAGCTGGAATGCCAATTCGATTCAGTTTCAAAGATCTTCAAGATGCGACCAACGATTTCTCTGTCAAGCTGGGGCAAGGAGGGTTCGGTTCAGTCTACGGGGGCAGCTTACCAGATGGGACTCGGCTGGCGGTGAAGAAGCTGGAAGGGATCGGACAGGGGAAGAAAGAATTCCAAGCTGAAGTCAGCATCATCGGAAGCATCCATCACCTTCACTTGGTCAGGCTTAAGGGCTTCTGTGCAGAAGGAAGCCATCGTCTTCTTGCTTATGAATTCATGGCCAATGGGTCCTTGGACAAATGGATATTCAGGAAGAAGAAACAAGATCTCCTGCTAGATTGGGACAGAAGGTTCAATATAGCATTAGGAACAGCAAAAGGACTAGCTTACCTCCACCAAGACTGCGATGCCACCATAATTCACTGCGATATCAAACCGGAAAACGTCCTTCTCGACGATAATTTTCTGGCCAAAGTTTCGGATTTCGGCCTGGCCAAGATGATGACTCGAGAGCAAAGCCATGTCTTCACGCAAATGAGAGGCACGAGAGGGTACCTCGCCCCGGAATGGATCATAAATTATGCAATATCAGAGAAAAGCGACACCTACTAG 1434 46.16 MRKESRKTVPEEDGVVSSASLVANSWRIYNKDKVLLWQFIFSTTNYTNLTSMAVLDSNGMISFHYLPKGGPSIDSATKIPEDRCSLPVSCEAYFVCSTGSNCKCLSVLSPRSNCQTGIVSPCSSSPSNMQLEDAGNGLNYFALEFLQPFSKTDLDGCKSSCISNCSCLALFFQSSSASCFLLDRVGSFRGSTGGSDYVSYIKVLGEEKNSGDDGGDGKGQKHHTLAVVVIAISTVVAVSGLLYFSYRYVKKKKKKQLLPESQDGSSEDDKFFEGLAGMPIRFSFKDLQDATNDFSVKLGQGGFGSVYGGSLPDGTRLAVKKLEGIGQGKKEFQAEVSIIGSIHHLHLVRLKGFCAEGSHRLLAYEFMANGSLDKWIFRKKKQDLLLDWDRRFNIALGTAKGLAYLHQDCDATIIHCDIKPENVLLDDNFLAKVSDFGLAKMMTREQSHVFTQMRGTRGYLAPEWIINYAISEKSDTY 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17288525 17289958 + Bma001592.1 Bma01g01276 75793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01276 477 SUPERFAMILY Protein kinase-like (PK-like) 276 477 IPR011009 -
Bma01g01276 477 Gene3D Phosphorylase Kinase; domain 1 257 366 - -
Bma01g01276 477 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 477 - -
Bma01g01276 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Bma01g01276 477 ProSiteProfiles Protein kinase domain profile. 292 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01276 477 CDD PAN_AP_plant 149 203 - -
Bma01g01276 477 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 477 - -
Bma01g01276 477 Pfam Protein kinase domain 296 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01276 477 ProSiteProfiles PAN/Apple domain profile. 122 205 IPR003609 -
Bma01g01276 477 ProSitePatterns Protein kinases ATP-binding region signature. 298 321 IPR017441 GO:0005524
Bma01g01276 477 SMART serkin_6 292 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01276 477 Gene3D Transferase(Phosphotransferase) domain 1 367 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01276 - - - jre:108985155 629.402
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01276 Bma02g00024 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01276 Bma-Chr1:17288525 Bma15g00414 Bma-Chr15:4485104 5.82E-133 dispersed
Bma01g01276 Bma-Chr1:17288525 Bma02g00024 Bma-Chr2:300233 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66279 PF00069 Pkinase 1.50E-38 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01276 Bma_Chr01 FPKM 0.684783 0.470396 1.608091 1.67306 3.204316 3.511622 2.733607 2.229251 2.207923 2.042027