Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g01279 | ATGGGTTTAGTAAGACCCAGAGAGGTTATATTTTACTTCCCCACTGCTCATTTCGTTCGAATGGATTTTTTTACTTCTTCATCAGTGCAACATGAATGTATTCCCCAAGCTATTCTGGGTATGGATGTTCTTTGTCAAGCTAAATCCGGGATGGGGAAAACTGCTGTTTTCGTACTATCCACCCTGCAGCAAATTGACCCAGTAGCGGGTCAAGTTTCTGCCCTGGTTCTTTGTCATACAAGAGAGCTAGCATACCAGATTTGCCATGAGTTTGAGAGGTTCAGTTCTTACTTGTCTGATCTCAAAGTATCGGTGTTCTATGGTGGTGTCAATATTAGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATTTTGGCATTGGCAAGAGATAAGGATCTTTCTCTAAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGAAGGGATGTGCAGGAAATTTTCAAGATGACGCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATTCGACCGGTTTGCCATAAATTTATGCAAGATCCTATGGAAATATATGTAGATGACGAGGCAAAGTTGACCTTGCACGGCCTTGTGCAGCACTACATCAAATTGACTGAAGCAGAGAAAAATCGGAAGTTGAATGACCTTCTAGATGCGTTGGACTTCAATCAAGTTGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTGAGCTGGATAAGTTACTGGTGGAGTGTAATTTTCCTTCTATATGCATTCACTCTGGCATGTCTCAGGAGGAAAGGTTGACGCGTTACAAGGGTTTCAAGGAGGGCCATAAGAGGATTCTTGTTGCTACAGATTTGGTTGGTCGGGGTATTGACATTGAACGTGTGAACATTGTTATTAATTATGATATGCCAGATTCTGCCGACACTTATCTACACAGGGTTGGGAGAGCTGGAAGGTTTGGTACTAAAGGGCTGGCAATTACTTTTGTATCATCTGCTTCCGACACTGATGTTCTCAACAATGTGCAACAAAGGTTTGCAGTGAATATAATGGAACTTCCAGAGCAGATTGATACTTCTACTTACATGCCATCATAA | 1155 | 41.21 | MGLVRPREVIFYFPTAHFVRMDFFTSSSVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDTDVLNNVQQRFAVNIMELPEQIDTSTYMPS | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17310403 | 17312886 | + | Bma001594.1 | Bma01g01279 | 75796 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g01279 | 384 | Gene3D | - | 216 | 383 | IPR027417 | - | |
Bma01g01279 | 384 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE | 19 | 379 | - | - | |
Bma01g01279 | 384 | SMART | ultradead3 | 22 | 223 | IPR014001 | - | |
Bma01g01279 | 384 | Pfam | Helicase conserved C-terminal domain | 233 | 340 | IPR001650 | - | |
Bma01g01279 | 384 | CDD | DEADc_DDX39 | 27 | 209 | - | - | |
Bma01g01279 | 384 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 34 | 207 | IPR014001 | - | |
Bma01g01279 | 384 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 19 | 379 | - | - | |
Bma01g01279 | 384 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 235 | 380 | IPR001650 | - | |
Bma01g01279 | 384 | Pfam | DEAD/DEAH box helicase | 28 | 193 | IPR011545 | GO:0003676|GO:0005524 | |
Bma01g01279 | 384 | Gene3D | - | 15 | 215 | IPR027417 | - | |
Bma01g01279 | 384 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 72 | 353 | IPR027417 | - | |
Bma01g01279 | 384 | CDD | SF2_C_DEAD | 220 | 349 | - | - | |
Bma01g01279 | 384 | SMART | helicmild6 | 259 | 340 | IPR001650 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g01279 | Bma02g00027 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01279 | Bma-Chr1:17310403 | Bma11g00823 | Bma-Chr11:25648476 | 0 | dispersed | |
Bma01g01279 | Bma-Chr1:17310403 | Bma02g00027 | Bma-Chr2:313407 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g01279 | K12812 | - | csv:101217346 | 686.026 |