Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01279 ATGGGTTTAGTAAGACCCAGAGAGGTTATATTTTACTTCCCCACTGCTCATTTCGTTCGAATGGATTTTTTTACTTCTTCATCAGTGCAACATGAATGTATTCCCCAAGCTATTCTGGGTATGGATGTTCTTTGTCAAGCTAAATCCGGGATGGGGAAAACTGCTGTTTTCGTACTATCCACCCTGCAGCAAATTGACCCAGTAGCGGGTCAAGTTTCTGCCCTGGTTCTTTGTCATACAAGAGAGCTAGCATACCAGATTTGCCATGAGTTTGAGAGGTTCAGTTCTTACTTGTCTGATCTCAAAGTATCGGTGTTCTATGGTGGTGTCAATATTAGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATTTTGGCATTGGCAAGAGATAAGGATCTTTCTCTAAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGAAGGGATGTGCAGGAAATTTTCAAGATGACGCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATTCGACCGGTTTGCCATAAATTTATGCAAGATCCTATGGAAATATATGTAGATGACGAGGCAAAGTTGACCTTGCACGGCCTTGTGCAGCACTACATCAAATTGACTGAAGCAGAGAAAAATCGGAAGTTGAATGACCTTCTAGATGCGTTGGACTTCAATCAAGTTGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTGAGCTGGATAAGTTACTGGTGGAGTGTAATTTTCCTTCTATATGCATTCACTCTGGCATGTCTCAGGAGGAAAGGTTGACGCGTTACAAGGGTTTCAAGGAGGGCCATAAGAGGATTCTTGTTGCTACAGATTTGGTTGGTCGGGGTATTGACATTGAACGTGTGAACATTGTTATTAATTATGATATGCCAGATTCTGCCGACACTTATCTACACAGGGTTGGGAGAGCTGGAAGGTTTGGTACTAAAGGGCTGGCAATTACTTTTGTATCATCTGCTTCCGACACTGATGTTCTCAACAATGTGCAACAAAGGTTTGCAGTGAATATAATGGAACTTCCAGAGCAGATTGATACTTCTACTTACATGCCATCATAA 1155 41.21 MGLVRPREVIFYFPTAHFVRMDFFTSSSVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDTDVLNNVQQRFAVNIMELPEQIDTSTYMPS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17310403 17312886 + Bma001594.1 Bma01g01279 75796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01279 384 Gene3D - 216 383 IPR027417 -
Bma01g01279 384 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 19 379 - -
Bma01g01279 384 SMART ultradead3 22 223 IPR014001 -
Bma01g01279 384 Pfam Helicase conserved C-terminal domain 233 340 IPR001650 -
Bma01g01279 384 CDD DEADc_DDX39 27 209 - -
Bma01g01279 384 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 207 IPR014001 -
Bma01g01279 384 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 379 - -
Bma01g01279 384 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 235 380 IPR001650 -
Bma01g01279 384 Pfam DEAD/DEAH box helicase 28 193 IPR011545 GO:0003676|GO:0005524
Bma01g01279 384 Gene3D - 15 215 IPR027417 -
Bma01g01279 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 353 IPR027417 -
Bma01g01279 384 CDD SF2_C_DEAD 220 349 - -
Bma01g01279 384 SMART helicmild6 259 340 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01279 Bma02g00027 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01279 Bma-Chr1:17310403 Bma11g00823 Bma-Chr11:25648476 0 dispersed
Bma01g01279 Bma-Chr1:17310403 Bma02g00027 Bma-Chr2:313407 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01279 K12812 - csv:101217346 686.026