Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01291 ATGCCTCTCTTGGAAGCATACAGAGATCACCCCCTTGACCTCCACCATATCATCCCGATTGACTTTGGATCAGCCCGGAGGGTACCTGATTCTCATTCATGGCCTCACTCCGATGGTTCCACTCGTTGGCCGGACCACTCTGATGAGCGCCCTCCGTCCATTCCCCTGATCGATCTATCGGATCCTAATGCAGCTGAGCTCATTGGCCAGGCCTGCGAATCTTGGGGAGTGTTCCATCTGATAAATCATGGGATTCCATCGACAGTGGTGGAGGAAACTGAGGTTGAGGCTCGAAGATTCTTTTCCCTTCCGGCCAACCAAAAGTTGAAGGCCGTTCGATCCGCCGGAGGGACGACTGGGTATGGTATGGCTCGCATATCGCCCTTCTTTGCCAAGTATATGTGGCATGAAGGATTCACCATCATCGGCTCTCCCATCGATCATGTTAAGGGTATTTGGCCCTCTCATTCTCAACGCTTTTGCAATGTAATGGAAGAGTACCAGAGGAAGATGAAGACAGTTGCAGAGAGAATATGGGGAATGATAACGGACTACTTGGAGATTTCAGAGCCAGAACTGATGAACTGGGCGTCCTCCACTACCGACGGAAGACAACCCTGCATGGCCTTACACCTTAACTCTTATCCGCCATGTCCGGACCCAAGCCGGGCAATGGGTCTAGCCCCACACACAGACACCTTCTTACTGACCATCCTTCACCAAACCCTCGTTCATGGCCTCCAAATCTTCAAAGAGGGTGTCGGGTGGGTCCCTGTGGCTCCGAGGGCCGGAGCTCTTGTGGTCAACGTCGGCGATCTCTTGCACATTCTGTCGAATGCCCGGTTTCCGAGCCTAGTTCATCGGGCGGCGGTGAATGTGAGCAGTCATCGTTTCTCTGTTGTCTATTTCTATGGCCCTCCCACAGATTTTTGTATTTCACCCGTCTGTACTAAAACTGTGGGTTCGGAGCTTCGAAATTCTCCGGTGTATCGTTCTGTGACTGTCAAGGACTATGTCAACTTGAAGGCTAAGAACTTGGAGAAAGCTCTTTCTTTAATGGCAATTTGA 1068 51.31 MPLLEAYRDHPLDLHHIIPIDFGSARRVPDSHSWPHSDGSTRWPDHSDERPPSIPLIDLSDPNAAELIGQACESWGVFHLINHGIPSTVVEETEVEARRFFSLPANQKLKAVRSAGGTTGYGMARISPFFAKYMWHEGFTIIGSPIDHVKGIWPSHSQRFCNVMEEYQRKMKTVAERIWGMITDYLEISEPELMNWASSTTDGRQPCMALHLNSYPPCPDPSRAMGLAPHTDTFLLTILHQTLVHGLQIFKEGVGWVPVAPRAGALVVNVGDLLHILSNARFPSLVHRAAVNVSSHRFSVVYFYGPPTDFCISPVCTKTVGSELRNSPVYRSVTVKDYVNLKAKNLEKALSLMAI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17572579 17574495 - Bma001607.1 Bma01g01291 75808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01291 355 MobiDBLite consensus disorder prediction 29 53 - -
Bma01g01291 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 54 144 IPR026992 -
Bma01g01291 355 Gene3D - 22 349 IPR027443 -
Bma01g01291 355 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 346 - -
Bma01g01291 355 Pfam 2OG-Fe(II) oxygenase superfamily 210 306 IPR044861 -
Bma01g01291 355 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 346 - -
Bma01g01291 355 SUPERFAMILY Clavaminate synthase-like 18 345 - -
Bma01g01291 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 205 306 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01291 K04124 GA3ox; gibberellin 3beta-dioxygenase [EC:1.14.11.15] - tcc:18588944 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01291 Bma-Chr1:17572579 Bma15g00392 Bma-Chr15:4363862 7.96E-119 dispersed
Bma01g01291 Bma-Chr1:17572579 Bma02g00037 Bma-Chr2:373549 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g431 . . . . . . . . Cmo05g00680 . . Cma05g00649 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01291 . . . . . . . . Cpe11g00573 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012840 1 1 0 2 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01291 Bma_Chr01 FPKM 6.657488 8.299678 4.465362 3.152269 13.634906 14.843406 11.383023 1.103015 1.180992 1.024194