Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01297 ATGGGTGTCCTAAAAACTACATTACTGTGTTTGATTTTACTGCACACCCGCTTCACCTCTGCAGTCGACGATGAAGAATGGAAAACTGCTACTGCAACAAATGCCAAAGAAACAGATGGCTCCATCATTACAGAAGGTGCTTGTGGTTATGGGGATCTTCACAGGATTAGCTACGGAAAGCACAGTGCTGGATTGAGTGGCATTCTGTTCAACAGAGGGGGTACTTGTGGGGCTTGTTATGAGCTTAGATGTGTTGACCACATTTTATGGTGTCTGCAAGGAAGCCCTTCTGTGATTCTCACTGCTACAGATTTCTGCCCTCCAAATTACGGGATGTCGTCCGACTATGGCGGCTGGTGTAATTTCCCCAATGAACACTTTGAAATGTCTGAGGCAGCTTTTTCTCAAATCGCAGAGAAGATAGCTGACATTGTACCTGTTCAGTATAGAAGGGTAAAGTGCGACAGAAATGGCGGGGTTAGGTTCAGGGTGAGTGGAAATTCTCATTTCTGTCAAGTTTTGATCACAAATGTTGGGGTTGACGGTGAAGTTGTGGGGGTGAAGGTGAAGGGATCAAGAACAGGGTGGATACCCATGGCTAGAAATTGGGGACAGAATTGGCAAAGCAATGTCAATCTTAAAGGGCAGCCTCTTTCTTTTGAGGTAACTACAAGCAATGGGAAGACATTGACCTCGTACAATGTAGCTCCACCAAACTGGCAGTTTGGTCAGACTTATGAAGGTAAACAATTCTAA 756 44.97 MGVLKTTLLCLILLHTRFTSAVDDEEWKTATATNAKETDGSIITEGACGYGDLHRISYGKHSAGLSGILFNRGGTCGACYELRCVDHILWCLQGSPSVILTATDFCPPNYGMSSDYGGWCNFPNEHFEMSEAAFSQIAEKIADIVPVQYRRVKCDRNGGVRFRVSGNSHFCQVLITNVGVDGEVVGVKVKGSRTGWIPMARNWGQNWQSNVNLKGQPLSFEVTTSNGKTLTSYNVAPPNWQFGQTYEGKQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17676862 17677993 - Bma001614.1 Bma01g01297 75814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01297 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Bma01g01297 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Bma01g01297 251 Gene3D - 14 155 IPR036908 -
Bma01g01297 251 SMART dpbb_1 62 149 IPR007112 -
Bma01g01297 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Bma01g01297 251 PANTHER EXPANSIN-A20 3 251 - -
Bma01g01297 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Bma01g01297 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Bma01g01297 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Bma01g01297 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Bma01g01297 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Bma01g01297 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Bma01g01297 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Bma01g01297 251 Gene3D - 156 251 IPR036749 -
Bma01g01297 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Bma01g01297 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Bma01g01297 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Bma01g01297 251 PANTHER EXPANSIN-A15 3 251 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01297 Bma-Chr1:17676862 Bma12g00887 Bma-Chr12:40166936 1.55E-102 dispersed
Bma01g01297 Bma-Chr1:17676862 Bma08g01058 Bma-Chr8:49674715 4.13E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01297 - - fve:101307261 422.935