Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01300 ATGGATGTTCCCCCCTTGGAACAAAGTGAAACGGAAACTTACCCTTTAATAATGGAAAGATCAGAAAATCTTAACAACACTGAACACACTGTGGACATATTAGATACTGGTGATGCTTCATCGTCAAGCTTGTCTCATGATCGACGGTACACTGGGTCAAATGCATCACAGATTGAAGATAGACCTTCAAGCAGCACACGAGTGCCTACTTCTGAACCACCAATTGCTCTTAATGGATCAAACTCTCGGAATTCCTCATTCACTAGGAGAGGGAACACACGTCGTCGTCAGAGTCCATTGAATTCCAGTTTATGGATATCTATTGAACTTGTTCTTACACTAAGTCAGATTGTTGCAGCCGTAGTTGTTTTGTCATTATCGAGGCATGAGCATCCACGTGCCCCGTTGTTTCAGTGGATTGTGGGATACGCATCTGGTTGTGTTGCTACCCTCCCTCTTCTCTACTGGCGCTATAGACATCGTAACCAGGCTTTAGACCAGGATTCATCTCAATCTCGCCAGAATTCTACTCAAGTTTCTATTTCAGCTACTAGGACATCAGAATGGGAAGATCGCCAAACCGCTGTCTCTCCTCCTACTAGCAATCAAAGTTCTGGTGCACTTAGTGCGAGGCTGAAGATATCCGTAGAATATTTTAAGATGGGCTTGGATTGTTTTTTTGCTGTTTGGTTTGTAGTTGGCAATGTGTGGATCTTTGGAGGGCACTCGTCAGCCTCTGAGTCTCCTAACTTGTACAGGTTATGTATAGTTTTTCTCACCTTTAGCTGTATCGGATATGCAATGCCCTTCATTCTATGCGTGACCATCTGCTGTTGTCTGCCCTGTATAATTTCCATCCTTGGGTTTAGAGAAGATCTGTCCCAAACTAGCGGTGCCACTGCTGAATCAATCGATGCTTTGCCTACATACAAGTTCAAGGTGAAGAAAAGTAAAAGTGGGGATGAAAACAACTCAGGTGGTGGTGAAGGTGGGATTGTGGCTGCTGGAACGGAAAAGGAACGCGTTATTTCTGGTGAAGATGCTGTTTGTTGCATCTGCCTGGCTAAATACTCCAACAACGATGAATTGAGAGAGTTGCCATGTTCTCACTTCTTTCACAAGGATTGTGTGGATAAATGGCTGAAGATCAACGCTTTATGCCCTCTCTGCAAGACGGAGGTTGGTGAGAGCATCTTAGGCTCACTCAACGGCCCAAGCACTAACCACCACCAAGGGGAT 1239 44.79 MDVPPLEQSETETYPLIMERSENLNNTEHTVDILDTGDASSSSLSHDRRYTGSNASQIEDRPSSSTRVPTSEPPIALNGSNSRNSSFTRRGNTRRRQSPLNSSLWISIELVLTLSQIVAAVVVLSLSRHEHPRAPLFQWIVGYASGCVATLPLLYWRYRHRNQALDQDSSQSRQNSTQVSISATRTSEWEDRQTAVSPPTSNQSSGALSARLKISVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASESPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLSQTSGATAESIDALPTYKFKVKKSKSGDENNSGGGEGGIVAAGTEKERVISGEDAVCCICLAKYSNNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESILGSLNGPSTNHHQGD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17778344 17780479 + Bma030244 Bma01g01300 75817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01300 413 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 407 - -
Bma01g01300 413 Pfam Ring finger domain 350 391 IPR001841 -
Bma01g01300 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 398 IPR013083 -
Bma01g01300 413 ProSiteProfiles Zinc finger RING-type profile. 350 391 IPR001841 -
Bma01g01300 413 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 407 - -
Bma01g01300 413 MobiDBLite consensus disorder prediction 167 205 - -
Bma01g01300 413 SMART ring_2 350 390 IPR001841 -
Bma01g01300 413 MobiDBLite consensus disorder prediction 34 95 - -
Bma01g01300 413 SUPERFAMILY RING/U-box 342 396 - -
Bma01g01300 413 SMART ringv_2 349 391 IPR011016 GO:0008270
Bma01g01300 413 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01300 Bma-Chr1:17778344 Bma02g01042 Bma-Chr2:51943709 4.92E-52 dispersed
Bma03g00136 Bma-Chr3:1029584 Bma01g01300 Bma-Chr1:17778344 1.36E-11 dispersed
Bma05g00899 Bma-Chr5:46831715 Bma01g01300 Bma-Chr1:17778344 5.47E-09 transposed
Bma13g01130 Bma-Chr13:44393231 Bma01g01300 Bma-Chr1:17778344 8.53E-56 transposed
Bma14g00672 Bma-Chr14:7287258 Bma01g01300 Bma-Chr1:17778344 1.96E-52 transposed
Bma15g00389 Bma-Chr15:4321863 Bma01g01300 Bma-Chr1:17778344 1.26E-140 transposed
Bma01g01300 Bma-Chr1:17778344 Bma02g00041 Bma-Chr2:391580 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01300 - - csv:101211818 605.52