Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01305 ATGGCTGCCACTGCAACTTCTTCTTCTTCGCTAGCTCTGTTTCCCGCTAAGTTGGTCTTCAGAGGAGGCGTCGAGACTTCGAAAGCTAAGTTTTTGACCCCCTGTTTGAAACCTTCAACTCTATGCCTATCGATTTCAGTACCTGTCCAGAATTCAAAGCGCGCAAGCTTCAAAATATGGGCGTCCGTTTCGATGTCTTCCCCAGACGTTCGAACGAGCCCTGCGGATCTCGTAGATTCTATTATCTCAAAGGTTGCGCAAAGTGATAGAGGGGTTTTTCTTACCAAAGAGAAGCACAAAGAGGTAGCTGAAGTGGCTCAGGAATTGCAGAAATATTGTGTTGACGAACCTGTAAAATGCCCTCTTATATTTGGAGATTGGGATGTTCTCTACTGTTCTAATCCAACTTCGCCGGGAGGCGGCTACAGAAGCGCGGTGGGCCGTCTCTTCTTCAAAACGAAGGAAATGATTCAGGTTGTCCGAAGCCCCGGACACTGTGAAAAATAA 507 47.14 MAATATSSSSLALFPAKLVFRGGVETSKAKFLTPCLKPSTLCLSISVPVQNSKRASFKIWASVSMSSPDVRTSPADLVDSIISKVAQSDRGVFLTKEKHKEVAEVAQELQKYCVDEPVKCPLIFGDWDVLYCSNPTSPGGGYRSAVGRLFFKTKEMIQVVRSPGHCEK 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17870941 17871676 - Bma001625.1 Bma01g01305 75822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01305 168 PANTHER PLASTID-LIPID-ASSOCIATED PROTEIN 8, CHLOROPLASTIC-RELATED 24 164 - -
Bma01g01305 168 PANTHER - 24 164 IPR039633 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01305 - - - csv:101204602 213.386
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g221 . . . . . . . . . . . Cma05g00638 . . . . . Bhi04g01065 . . . . . Lcy13g1705 . . . . . . . Cone4ag1847 . . . . . . . . Blo18g00051 . . . . Bma01g01305 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002677 3 5 2 1 1 1 3 0 1 1 2 1 3 2 2 3 1 3 3 1 1 1 1 2 2 1 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01305 Bma_Chr01 FPKM 17.541792 18.635492 19.244736 16.081081 11.147693 10.452558 10.622405 12.059408 12.755173 12.862215