Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01306 ATGGCACCTAAGAAGCGAAGTGCAACTCAGCCAGAAGAAGACTCTGCCAAGCCTGTTGAGTCTTTTTCTAGGGTGACTCGGAGCTCCACTAGGCGAGTGGATAAGTTGAACTCTGTCTCTGCTAACTTGCCTGACGAGTTGCCTAAGAGGAAAAAGGCGAAAACTGAGCCGAAGGAGAAGGAGAAGGAGAATGGGAAGTTGACGAAGAAGGGAAAGTCCGGCAAGGTTGTCGAAGCTGAGGTCGCAAAGAAAGAAGATTCGGAAAACGTTGGTGAGGTGACGAACAAGAGGATCTTTGTGATTGAGTACTGCAAGCAGTGCCGCTCCTTCCTGACAAGGGCTGTCCAGGTGAAAGAGGGTCTAGAGAAAGGAGTTAATGGTATTACAGTGCTGATGAATCCTGAGAAGCCAAGAAAGGGTTGCTTTGAAATTCGGTATGAAGGTGGTGAGAAGTTTGTCAGTCTTCTGGAGATGAAGCGACCATTTACCCCGATGAAGAATCTAGACATGGAGAAAGTCATTTCGGAAATTATTGAGAAGATCAAAGGATGA 552 46.92 MAPKKRSATQPEEDSAKPVESFSRVTRSSTRRVDKLNSVSANLPDELPKRKKAKTEPKEKEKENGKLTKKGKSGKVVEAEVAKKEDSENVGEVTNKRIFVIEYCKQCRSFLTRAVQVKEGLEKGVNGITVLMNPEKPRKGCFEIRYEGGEKFVSLLEMKRPFTPMKNLDMEKVISEIIEKIKG 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17883159 17886565 + Bma001626.1 Bma01g01306 75823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01306 183 MobiDBLite consensus disorder prediction 21 37 - -
Bma01g01306 183 MobiDBLite consensus disorder prediction 45 87 - -
Bma01g01306 183 MobiDBLite consensus disorder prediction 1 87 - -
Bma01g01306 183 Gene3D Glutaredoxin 97 169 - -
Bma01g01306 183 PANTHER SELENOPROTEIN H 1 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01306 - - - jcu:105637464 153.295
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g216 . . . . Bpe02g01221 . . . . Cmo12g00237 . . . Car12g00270 . Cpe07g00247 . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00053 Bda01g00969 . Bpe14g00557 . Bma01g01306 . . . . . . . . . . . . . . . . . . . . . . . . . Csa02g02330 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008510 1 1 1 1 2 0 2 1 1 1 0 1 1 2 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01306 Bma_Chr01 FPKM 29.1035 32.98336 33.32935 34.992905 50.982807 59.25835 49.540993 51.649067 45.903328 40.53064