Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01312 ATGGATGAATGTTCCATGAAAAGGTCTAGTGAGAGACTGGCAGCTAGAAAAATGCCTGGTGTAGTTCAGAAAGAATCAGACAAGGGAAGATATCAAAATTCTCGGATTTGCCCTCGTCTCAGTTGTAGCAGTAGATTAGCTTCTTCAGAGAGTAGTAAGTCTGCAAAGACTCCTTCAAATGGGAAAGAAATAGTTGGAAGTTCTTCAAGGACGGGTTGTTTTATTGGAAAGTCCAAAAAATCTACGTTTGAGAGTCGGATGAAGCTGCCTTCTCGGTCCGAATCGGAGCCTTCTGAAAATGGTGGCATTAAGGATGAACATGAAGGTTCTGACCTTATCCCTCCTGGAAAAATTCAAAAAGGGCTTCATGCTCATTCTAAAAGCTGCAATTCCATCAATGGTGGAAGCTCTAGCGAAGCACCAAACTCGAGATCTTCTGTTTCGGTGGGAGCTAAAAATCTTAGCTCAGCCTCTAGTGCCGGTCCCAATCATTTTGGTCTGAGAAAGTTAAAAGGCAACCTCAATCCATTGGGCTGTTGTTCATCTAATAAAAATCACCGTGGAATGAAGGATATTGGTAAAAATTCGAATTCTGAAAGAGAAAGTAGCTTTATTTCTAGAGGAAAAACGACCAATGGATCGCAGCCGAGACAGAATATCAACTCCAATCATGGCATATCCATTTCTGATTCGAGAATAACCCGAAATATACCTCCTCGAAGCGAATTGGGTGGTTCATTGGCTAGGACTAGGAACTCAGTCAATGGGAATATAAGAACAAGTCTGTCTATGGAGTCCTCCAGCACGAGCCGCAGAATTCCGCGACGAAATGTCTCCATAAATGGTAATGCATCGACTTCGTCAAACCAATCATCAACCGAGCTGACCTCTCGTCGACCGTTTTCTTACACCCGACCAAGAAATAGCAATGAGAATCTTGCCAGACCCGCCTCTCCTGCCGAACTGGGCACAAACCGGTCATTAACGAATCGGGAAAGCTTGCAAAGTTACAACATCAATGGCATTGCCGAGGTATTGTTGGCACTGGAGAGGATTGAACAAGATGAAGAGCTAACATATGAGCAAGTAATGCTTCTTGAGACTAGTCTCTTCTTAAACGCTGCAAACTTATTTGATCAGCACAGAGGCATGAGACTGGACATTGATGACATGTCCTACGAGGAACTGCTAGCTCTGGAAGAGAGAATGGGAACTGTGAGTACGGCTCTGACCGAAGATGCACTTTCTCGGTGTCTCAAACGAAGCATTTTCCAGTCGAACAACGACGGAGTTCGATGCTGCAGTGACGAAAAAGATGATATCAAATGTTGTATTTGCCAGGAAGAATATGTCAATGGAGATACAGTTGGGAGGTTGGAATGCAAGCATAGGTATCACGAAGAATGCATACAACAATGGCTTCGGCAGAAGAACTGGTGTCCCATCTGTAAAGCATCAGCTGAACACCCTCTCCGGCCATCTTCGTCTTCGCCGTCTTCTTCGTCTTAG 1509 44.33 MDECSMKRSSERLAARKMPGVVQKESDKGRYQNSRICPRLSCSSRLASSESSKSAKTPSNGKEIVGSSSRTGCFIGKSKKSTFESRMKLPSRSESEPSENGGIKDEHEGSDLIPPGKIQKGLHAHSKSCNSINGGSSSEAPNSRSSVSVGAKNLSSASSAGPNHFGLRKLKGNLNPLGCCSSNKNHRGMKDIGKNSNSERESSFISRGKTTNGSQPRQNINSNHGISISDSRITRNIPPRSELGGSLARTRNSVNGNIRTSLSMESSSTSRRIPRRNVSINGNASTSSNQSSTELTSRRPFSYTRPRNSNENLARPASPAELGTNRSLTNRESLQSYNINGIAEVLLALERIEQDEELTYEQVMLLETSLFLNAANLFDQHRGMRLDIDDMSYEELLALEERMGTVSTALTEDALSRCLKRSIFQSNNDGVRCCSDEKDDIKCCICQEEYVNGDTVGRLECKHRYHEECIQQWLRQKNWCPICKASAEHPLRPSSSSPSSSS 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17911667 17913543 - Bma001631.1 Bma01g01312 75829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01312 502 MobiDBLite consensus disorder prediction 124 162 - -
Bma01g01312 502 CDD RING-H2_TTC3 442 484 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 81 113 - -
Bma01g01312 502 SMART ring_2 443 483 IPR001841 -
Bma01g01312 502 ProSiteProfiles Zinc finger RING-type profile. 443 484 IPR001841 -
Bma01g01312 502 MobiDBLite consensus disorder prediction 198 236 - -
Bma01g01312 502 Pfam Ring finger domain 442 484 IPR001841 -
Bma01g01312 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 488 IPR045191 GO:0061630
Bma01g01312 502 MobiDBLite consensus disorder prediction 181 329 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 36 78 - -
Bma01g01312 502 SUPERFAMILY RING/U-box 435 489 - -
Bma01g01312 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 490 IPR013083 -
Bma01g01312 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 488 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 246 315 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 1 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01312 - - - jre:109009571 400.979
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02125 Bma01g01312 CCT
Bma01g01312 Bma02g00056 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01312 Bma-Chr1:17911667 Bma01g02125 Bma-Chr1:77736610 1.78E-63 dispersed
Bma01g00659 Bma-Chr1:6000514 Bma01g01312 Bma-Chr1:17911667 8.73E-34 transposed
Bma01g01919 Bma-Chr1:70826452 Bma01g01312 Bma-Chr1:17911667 1.13E-33 transposed
Bma08g00852 Bma-Chr8:46528110 Bma01g01312 Bma-Chr1:17911667 4.27E-12 transposed
Bma10g00486 Bma-Chr10:5721691 Bma01g01312 Bma-Chr1:17911667 2.12E-14 transposed
Bma12g00439 Bma-Chr12:11073626 Bma01g01312 Bma-Chr1:17911667 1.26E-30 transposed
Bma01g01312 Bma-Chr1:17911667 Bma01g02122 Bma-Chr1:77636854 5.56E-87 wgd
Bma01g01312 Bma-Chr1:17911667 Bma02g00056 Bma-Chr2:478451 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01312 Bma_Chr01 FPKM 9.159635 12.48326 10.953945 12.690254 20.443262 18.304068 21.804461 25.868341 25.182537 27.048758