Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01317 ATGGCTGACATCTCCTTGGAGGACGTCAAAAATGAGACCGTTGATCTTGAGCGGATTCCGATCGAGGAAGTTTTCGAGCAGCTCAAGTGTACGAGAGAAGGTTTGACAGGCGATGAAGGGGAGAAGAGGCTCGGAATTTTCGGTCCGAACAAGCTTGAGGAGAAAAAGGAGAGTAAGCTTCTCAAGTTCTTGGGATTTATGTGGAATCCCCTTTCATGGGTCATGGAATGTGCAGCAATTATGGCGATTGTTCTTGCCAATGGAGGGGTATTGACTATTGCATTAGTACATTCATATCAATTTCTCGCCGGAGGGTTAACGAATTTTTTATTGACGCAGGGGAAGCCGCCGGACTGGCAAGACTTCGTCGGAATTGTGGTTCTGCTCATCATCAACTCAACTATCAGCTTCATCGAGGAGAACAATGCCGGCAATGCTGCGGCTGCTCTCATGGCCGGTCTTGCCCCGAAGACGAAGGTGTTGAGGGACGGAAAATGGACGGAGCAAGAAGCGGCGATTCTGGTTCCCGGAGATGTGATCAGCATCAAGCTCGGAGATATTGTACCGGCCGATGCTCGTCTTCTCGAAGGGGACCCTCTTAAAATCGACCAATCTGCTCTCACCGGTGAATCTTTACCGGTCACTAAGCATCCCGGCCAAGAGGTCTTCTCCGGCTCCACCTGCAAGCAGGGTGAGATCGAGGCCGTCGTCATTGCCACCGGAGTCCATACCTTCTTCGGAAAGGCTGCTCATCTCGTCGACAGCACAAATCAAGTCGGTCATTTCCAAAAGGTTTTGACGGCCATTGGTAACTTCTGTATCTGCTCTATTGCAATCGGAATGGCTATCGAGATCGTAGTGATGTTCCCGATCCAGCACAGACCGTATAGAGAGGGTATCGATAACCTGTTGGTGCTTCTCATCGGAGGTATTCCGATTGCCATGCCGACGGTCCTGTCGGTAACTATGGCTATCGGTTCCCATCGTCTCTCCCAACAGGGGGCTATTACAAAGAGAATGACAGCCATTGAAGAGATGGCCGGCATGGACGTTCTCTGCAGCGACAAAACCGGGACACTCACGCTCAACAAACTTACAGTATTTGGGGAAGGTGTGGATAAAGATACCGTCGTTTTGCTCGCTGCGAGGGCTTCGAGAGTTGAGAACCAGGACGCTATCGACGCCTCCATTGTTGGAATGTTGGGTGATCCTAAAGAGGCCCGAGCAGGAATCAATGAGGTGCATTTCCTGCCTTTCAATCCGGTGGATAAGCGGACGGCTATCACATACATCGACGGCGAAGGTAACTGGCACCGGAGCAGCAAGGGCGCTCCTGAGCAGATTATCGATCTCTGTGAACTCGCCGGAGAAGCGAGGAAGAAGGCTCACGCTGTGATTGACAACTATGCCGAACGCGGTCTTCGTTCTCTGGCTGTTGCTCAACAGACCGTATCGGAGAAGACAAAGGAGAGCCTGGGAGATAAATGGGAGTTCATTGGCCTCTTGCCCCTCTTTGACCCGCCAAGACATGATAGTGCAGAGACGATCCGACGGGCTCTTGAACTTGGTGTTAACGTTAAAATGATCACCGGTGACCAACTCGCCATCGGAAAAGAAACCGGACGGAGACTCGGCATGGGTACCAACATGTATCCGTCGTCCTCCCTTCTCGGCCAAAGCAAGGACGAGTCTATTGCCTCCATTCCAGTCGACGAGCTCATCGAGAAGGCCGATGGATTCGCCGGAGTCTTCCCCGAACACAAGTACGAAATCGTTAAGAAGTTGCAAGAGAGGAAACATATTTGTGGAATGACCGGAGATGGAGTCAACGACGCTCCGGCGTTGAAGAAGGCCGACATTGGAATTGCAGTGGCTGATGCGACGGACGCCGCAAGAAGCGCGTCGGATATTGTTCTGACGGAGCCGGGTCTGAGCGTGATCGTGAGCGCCGTTCTGACGAGCAGAGCCATCTTTCAGAGGATGAAAAACTACACCATTTACGCAGTTTCCATCACGATTCGTATCGTCTTGGGATTCATGCTCGTCGCTCTTCTCTGGCAGTTCGACTTTTCGCCGTTCATGGTTCTGATAATCGCCATTTTGAACGACGGAACTATCATGACCATCTCTAAGGACAGAGTGAAGCCATCTCCTCTTCCGGACTCATGGAAGCTCAAAGAAATCTTCGCCACCGGCGTCGTTCTCGGAACGTACATGGCCGTCATGACCGTCGTCTTCTTCTGGCTCGCAAACGAAACCGACTTCTTCTCGAATGCTTTCGGTGTGAGATCAATCAAGGGTAGCCTGACCGAGCTCAACTCTGCTCTTTACCTCCAAGTGAGCATCATCAGTCAAGCTCTCATCTTCGTCACACGGTCAAGGAGCTGGTCTTTCGTTGAACGCCCCGGCGTCTTGCTCGTCAGTGCCTTCGTTGCTGCACAGTTGGTTGCTACCCTAATTGCAGTATATGCAAGTTGGGGATTTGCTAGGATTGAAGGCATTGGATGGGGATGGGCAGGAGTGATCTGGATCTACAGCGTCATTACCTACTTCCCTCTCGACGTCCTCAAGTTCATCATCCGCTACGCCCTGAGCGGGAAGGCGTGGGACAATATGCTTCAGAACAAGACTGCATTCACAACAAAGAAGGATTATGGAAAGGGAGAGAGAGAAGCTCAATGGGCGTTGGCTCAACGGACACTTCACGGACTCCAGGCGCCGGAAGTTCACTTTCACGACAAGAACACCCACCTCGACCACTCAGACCTTGCCGACGAGGCCATGAGACGCGCTGAAGTTGCTAGGTTGAGGGAGCTTCATACGCTGAAAGGGCATGTCGAATCAGTGGTGAAGCTGAAGGGGCTGGACATTGAAACCATCCAACAGCATTACACAGTTTGA 2901 51.78 MADISLEDVKNETVDLERIPIEEVFEQLKCTREGLTGDEGEKRLGIFGPNKLEEKKESKLLKFLGFMWNPLSWVMECAAIMAIVLANGGVLTIALVHSYQFLAGGLTNFLLTQGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMAIEIVVMFPIQHRPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVFGEGVDKDTVVLLAARASRVENQDAIDASIVGMLGDPKEARAGINEVHFLPFNPVDKRTAITYIDGEGNWHRSSKGAPEQIIDLCELAGEARKKAHAVIDNYAERGLRSLAVAQQTVSEKTKESLGDKWEFIGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALLWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGTYMAVMTVVFFWLANETDFFSNAFGVRSIKGSLTELNSALYLQVSIISQALIFVTRSRSWSFVERPGVLLVSAFVAAQLVATLIAVYASWGFARIEGIGWGWAGVIWIYSVITYFPLDVLKFIIRYALSGKAWDNMLQNKTAFTTKKDYGKGEREAQWALAQRTLHGLQAPEVHFHDKNTHLDHSDLADEAMRRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18021017 18024950 - Bma001636.1 Bma01g01317 75834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01317 966 Gene3D - 156 240 - -
Bma01g01317 966 ProSitePatterns E1-E2 ATPases phosphorylation site. 355 361 IPR018303 -
Bma01g01317 966 PANTHER CALCIUM-TRANSPORTING ATPASE 113 946 - -
Bma01g01317 966 PANTHER CALCIUM-TRANSPORTING ATPASE 1 89 - -
Bma01g01317 966 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Bma01g01317 966 Pfam haloacid dehalogenase-like hydrolase 349 619 - -
Bma01g01317 966 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 823 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bma01g01317 966 SFLD C1.7: P-type atpase like 335 657 - -
Bma01g01317 966 PANTHER PLASMA MEMBRANE ATPASE 113 946 - -
Bma01g01317 966 CDD P-type_ATPase_H 34 858 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bma01g01317 966 PANTHER PLASMA MEMBRANE ATPASE 1 89 - -
Bma01g01317 966 Gene3D - 118 832 - -
Bma01g01317 966 Gene3D - 365 505 IPR023299 GO:0000166
Bma01g01317 966 SUPERFAMILY HAD-like 349 652 IPR036412 -
Bma01g01317 966 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 864 IPR023298 -
Bma01g01317 966 Pfam E1-E2 ATPase 155 332 - -
Bma01g01317 966 PRINTS P-type cation-transporting ATPase superfamily signature 628 640 - -
Bma01g01317 966 PRINTS P-type cation-transporting ATPase superfamily signature 605 624 - -
Bma01g01317 966 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Bma01g01317 966 PRINTS P-type cation-transporting ATPase superfamily signature 522 532 - -
Bma01g01317 966 PRINTS P-type cation-transporting ATPase superfamily signature 353 367 - -
Bma01g01317 966 PRINTS P-type cation-transporting ATPase superfamily signature 500 511 - -
Bma01g01317 966 Gene3D - 916 966 - -
Bma01g01317 966 SFLD p-type atpase 335 657 IPR044492 -
Bma01g01317 966 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 125 369 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g01317 966 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 580 689 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g01317 966 Gene3D - 350 642 IPR023214 -
Bma01g01317 966 PRINTS H+-transporting ATPase (proton pump) signature 636 661 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g01317 966 PRINTS H+-transporting ATPase (proton pump) signature 577 593 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g01317 966 PRINTS H+-transporting ATPase (proton pump) signature 462 480 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g01317 966 PRINTS H+-transporting ATPase (proton pump) signature 777 798 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g01317 966 PRINTS H+-transporting ATPase (proton pump) signature 605 621 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g01317 966 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Bma01g01317 966 SUPERFAMILY Calcium ATPase, transduction domain A 156 253 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01317 Bma-Chr1:18021017 Bma01g02129 Bma-Chr1:77782617 0 dispersed
Bma03g01207 Bma-Chr3:18673076 Bma01g01317 Bma-Chr1:18021017 1.94E-50 transposed
Bma01g01317 Bma-Chr1:18021017 Bma02g00062 Bma-Chr2:498185 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01317 K01535 - csv:101214655 1625.91