Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01328 ATGGTGGATGTTTGCAGCGGTTGTGCGAACATGGTCTACGCAAATTGGCTCTTTAAGCAAGTTTTTGATCCAAATTTATACTTGTTCAACGCAATGATCAGAGCTTATACCCATAATCACACGTATGATCTAGCGATCGCCATGTATAAGCAAATGGTATTTCACCCGCTTATTTTCCCTGATGAATTCACTTTCCCATTTGTCATCAAATCTTGCTCGGGGCTTCTTCTTCATGATCTCGGTAAGCAAGTTCACGCTCAAATTTGGAAAATCGGGCCAAATTCTAATCATGTGATGGAAAATTCATTACTGGCTATGTATGTCAAGTGTAATAATCTCGCTGATGCACGTAAACTGTTTGATGAAATGCCTGAAAAGGATGCAATTTCATGGAACTGTCTTCTTTCAGGGCATGCTAGAATAGGACAGATGAAACATGCAAGAGCCATGTTTAATGAAATGCCTCAGAAGACTACTGTCTCTTGGACAGTCATGATTTCAGGCTACACTCAAATCGGGTGCTACGGCGAAGCCCTGGATTTTTTCTGGAAGATGCAAAAGATGAGTGTTCAACTTGATGATGTAACTATTCTATCCGTCTTACCCGCTTGTGCTCATCTTGGAGCTCTCGAAGCCGGGAAATGGATTCATTTCTACGCAGATAAAAACGGGTTTATGAAGATGAGGCAAATCTGTAATGCTCTTATTGAAATGTATATTCGATGTGGCTGCCTCGATCGAGGGTGGGAGTTGTTTAATCAAATGCCAGAGAAGGATGTGATTTCATGGAGTACTATGATTTTAGGGTTGGCAAATCATGGGAAAGCTCAGCAAGCCATTGAACTCTTTGAAGCAATGCAAAAATCAAAGATCAAGCCTAATGCCATTACATTTCTTGGCCTTTTGTCAGCTTGTAGCCATGCAGGACTATGGAATGAAGGGCTAAATTTCTTCCATTCCATGAAAAGAGATTTCCGAGTGGATCAGGAAATCGAGCATTATGGATGTTTGATCGATCTGCTTGGACGTACTGGGAACTTCGATCAGGCTCTCGATATTATAAAAATGATGCCGATGAAGCCAGATTCGAAGATTTGGGGTTCGCTTCTGAGTTCGAGTAGGATTCATAGCAATTTAGAGATTGCTAATATCGCGATGAACCGGCTGATGGAGTTCGAACCAGATGATGCAGGAAACTACGTGTTGCTTGCAAATATTTATGCAGATCTCAGAAAGTGGGACGGGATGTCGAGGATAAGGAGGCTCATGAGAACTAAAAATATGAAGAAAACTCCGGGGTGTAGCATGATTGAAGTTAACAATATGGTTCAAGAGTTTCTCTCGAGCGACATCTCAAAGCCTTTTACAAGACAGATGTTATGGATGATAGAGCTGCTTTCCTTCGACCCGAACAGAGCTGACGAAAGTGACATAACCAATCTGGAGAATTGA 1452 41.67 MVDVCSGCANMVYANWLFKQVFDPNLYLFNAMIRAYTHNHTYDLAIAMYKQMVFHPLIFPDEFTFPFVIKSCSGLLLHDLGKQVHAQIWKIGPNSNHVMENSLLAMYVKCNNLADARKLFDEMPEKDAISWNCLLSGHARIGQMKHARAMFNEMPQKTTVSWTVMISGYTQIGCYGEALDFFWKMQKMSVQLDDVTILSVLPACAHLGALEAGKWIHFYADKNGFMKMRQICNALIEMYIRCGCLDRGWELFNQMPEKDVISWSTMILGLANHGKAQQAIELFEAMQKSKIKPNAITFLGLLSACSHAGLWNEGLNFFHSMKRDFRVDQEIEHYGCLIDLLGRTGNFDQALDIIKMMPMKPDSKIWGSLLSSSRIHSNLEIANIAMNRLMEFEPDDAGNYVLLANIYADLRKWDGMSRIRRLMRTKNMKKTPGCSMIEVNNMVQEFLSSDISKPFTRQMLWMIELLSFDPNRADESDITNLEN 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18173621 18175072 - Bma001647.1 Bma01g01328 75845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01328 483 Pfam PPR repeat family 258 306 IPR002885 -
Bma01g01328 483 Pfam PPR repeat family 158 205 IPR002885 -
Bma01g01328 483 PANTHER OS05G0439300 PROTEIN 1 472 - -
Bma01g01328 483 TIGRFAM PPR: pentatricopeptide repeat domain 261 295 IPR002885 -
Bma01g01328 483 TIGRFAM PPR: pentatricopeptide repeat domain 160 193 IPR002885 -
Bma01g01328 483 TIGRFAM PPR: pentatricopeptide repeat domain 101 126 IPR002885 -
Bma01g01328 483 TIGRFAM PPR: pentatricopeptide repeat domain 334 357 IPR002885 -
Bma01g01328 483 TIGRFAM PPR: pentatricopeptide repeat domain 129 155 IPR002885 -
Bma01g01328 483 TIGRFAM PPR: pentatricopeptide repeat domain 231 260 IPR002885 -
Bma01g01328 483 Gene3D Tetratricopeptide repeat domain 330 461 IPR011990 GO:0005515
Bma01g01328 483 Gene3D Tetratricopeptide repeat domain 213 329 IPR011990 GO:0005515
Bma01g01328 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Bma01g01328 483 SUPERFAMILY TPR-like 229 413 IPR011990 GO:0005515
Bma01g01328 483 Gene3D Tetratricopeptide repeat domain 1 76 IPR011990 GO:0005515
Bma01g01328 483 Gene3D Tetratricopeptide repeat domain 82 212 IPR011990 GO:0005515
Bma01g01328 483 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 472 - -
Bma01g01328 483 Pfam E motif 376 438 IPR046848 -
Bma01g01328 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 126 IPR002885 -
Bma01g01328 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Bma01g01328 483 Pfam PPR repeat 101 126 IPR002885 -
Bma01g01328 483 Pfam PPR repeat 333 358 IPR002885 -
Bma01g01328 483 Pfam PPR repeat 28 53 IPR002885 -
Bma01g01328 483 Pfam PPR repeat 129 156 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01328 - - - qsu:112004410 659.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01328 Bma-Chr1:18173621 Bma05g00984 Bma-Chr5:48342511 1.25E-123 dispersed
Bma01g01328 Bma-Chr1:18173621 Bma01g01329 Bma-Chr1:18192951 8.35E-17 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g402 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01328 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019465 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01328 Bma_Chr01 FPKM 23.565042 24.88307 31.071222 30.228662 48.780285 45.992268 51.321228 40.949856 39.212486 43.395073