Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01329 ATGTTAGAGCTTAAAATGCATTCCTTGAAGTCGTCAATGGTGCAGAGAATCAGCGTCTTGAGCATCAAAGAAATCGAATGCTTCTTCTTTGCTCTTTTGCGAAACTGCACAAACCTTGTAGAGTTGAAGAAAACTCATGCCCATATAATCAAGTTCTCACTCACACAGAGCAATTACTTGGCTACGAAAATGGTGGATGTTTGCAGCGGTTGTGCGAACATGGTCTACGCAAATTGGCTCTTTAAGCAAGTTTTTGATCCAAATTTATACTTGTTCAACGCAATGATCAGAGCTTATACCCATAATCACACATATGATCTAGCGATCGCCATGTATAAGCAAATGGTATTTCACCCGCTTATTTTCCCTGATGAATACACTTTCCCATTTGTCATCAAATCTTGCTCGGGGCTTCTTCTTCATGATCTCGGTAAGCAAGTTCATGCGCAAATTTGGAAAATGGGGCCAAATTCTAATCATGTGATGGAAAATTCATTACTGGCTATGTACGTCAAATGTAATAATCTCGCTGATGCACGTAAATTGTTTGATGAAATGCATGAAAAGGATGCAATTGCATGGAACTGTCTTCTTTCAGGGCATGCTAGAATAGGACAGATGAAACATGCAAGAGCCATGTTTAATGAAATGCCTCAGAAGACTACTGTCTCTTGGACGGCCATGATTTCAGGCTACACTCAAATCGGGTGCTACGGTGAAGCCCTTGATTTTTTCTGGAAGATGCAAAAGATGAGTGTTCAACTTGATGATGTAACTATTCTATCCGTCTTACCCGCTTGTGCTCATCTTGGAGCTCTCGAAGCTGGAAAATGGATTCATTTCTACGCAGATAAAAACGGGTTTATGAAGATGAGGCAAATCTGTAATGCTCTTATTGAAATGTATATTCGATGTGGCTGCCTGGATCGAGGGTGGGAGTTGTTTAATCAAATGCCAGAGAAGGATGTGATTTCATGGAGTACTATGATTTTAGGGTTTGCAAATCATGGGAAAGCTCAGCAAGCCATTGAACTCTTTGAAGCAATGCAAAAATCAAAGATCAAGCCTAATGCCATTACATTTCTTGGCCTTTTGTCAGCTTGTAGCCATGCAGGACTATGGAATGAAGGGCTAAATTTCTTCCATTCCATGAAAAGAGATTTCCGAGTGGATCAGGAAATCGAGCATTATGGATGTTTGATCGATCTGCTTGGACGTACTGGGAACTTCGATCAGGCTCTCGATATTATAAAAACGATGCCGATGAAGCCAGATTCGAAGATTTGGGGTTCGCTTCTGAGTTCGAGTAGGATTCATAGCAATTTAGAGATTGCTAATATCGCGATGAACCGGCTGATGGAGTTCGAACCAGATGATGCAGGAAACTACGTGTTGCTTGCAAATATTTATGCAGATCTCAGAAAGTGGGACGGGATGTCGAGGATAAGGAGGCTCATGAGAACTAAAAATATGAAGAAAACTCCGGGGTGTAGCATGATTGAAGTTAATAATATGGTTCAAGAGTTTCTCTCTAGCGACATCTCAAAACCTTTTACAAGACAGATGATACGGATGATAGAGCTGCTTTCCTTCGACCCGAACGGAGCTGACGAAAGTGACATAACCATTCTGGAGAATTGA 1641 41.13 MLELKMHSLKSSMVQRISVLSIKEIECFFFALLRNCTNLVELKKTHAHIIKFSLTQSNYLATKMVDVCSGCANMVYANWLFKQVFDPNLYLFNAMIRAYTHNHTYDLAIAMYKQMVFHPLIFPDEYTFPFVIKSCSGLLLHDLGKQVHAQIWKMGPNSNHVMENSLLAMYVKCNNLADARKLFDEMHEKDAIAWNCLLSGHARIGQMKHARAMFNEMPQKTTVSWTAMISGYTQIGCYGEALDFFWKMQKMSVQLDDVTILSVLPACAHLGALEAGKWIHFYADKNGFMKMRQICNALIEMYIRCGCLDRGWELFNQMPEKDVISWSTMILGFANHGKAQQAIELFEAMQKSKIKPNAITFLGLLSACSHAGLWNEGLNFFHSMKRDFRVDQEIEHYGCLIDLLGRTGNFDQALDIIKTMPMKPDSKIWGSLLSSSRIHSNLEIANIAMNRLMEFEPDDAGNYVLLANIYADLRKWDGMSRIRRLMRTKNMKKTPGCSMIEVNNMVQEFLSSDISKPFTRQMIRMIELLSFDPNGADESDITILEN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18192951 18194591 - Bma001648.1 Bma01g01329 75846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01329 546 Pfam PPR repeat 193 219 IPR002885 -
Bma01g01329 546 Pfam PPR repeat 164 189 IPR002885 -
Bma01g01329 546 Pfam PPR repeat 91 116 IPR002885 -
Bma01g01329 546 Pfam PPR repeat 396 421 IPR002885 -
Bma01g01329 546 Gene3D Tetratricopeptide repeat domain 6 150 IPR011990 GO:0005515
Bma01g01329 546 Gene3D Tetratricopeptide repeat domain 152 274 IPR011990 GO:0005515
Bma01g01329 546 TIGRFAM PPR: pentatricopeptide repeat domain 294 323 IPR002885 -
Bma01g01329 546 TIGRFAM PPR: pentatricopeptide repeat domain 193 218 IPR002885 -
Bma01g01329 546 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Bma01g01329 546 TIGRFAM PPR: pentatricopeptide repeat domain 324 358 IPR002885 -
Bma01g01329 546 TIGRFAM PPR: pentatricopeptide repeat domain 164 190 IPR002885 -
Bma01g01329 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Bma01g01329 546 Pfam PPR repeat family 221 268 IPR002885 -
Bma01g01329 546 Pfam PPR repeat family 321 369 IPR002885 -
Bma01g01329 546 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 22 534 - -
Bma01g01329 546 Gene3D Tetratricopeptide repeat domain 393 522 IPR011990 GO:0005515
Bma01g01329 546 Gene3D Tetratricopeptide repeat domain 275 392 IPR011990 GO:0005515
Bma01g01329 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 220 IPR002885 -
Bma01g01329 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Bma01g01329 546 PANTHER OS05G0439300 PROTEIN 22 534 - -
Bma01g01329 546 SUPERFAMILY TPR-like 170 476 IPR011990 GO:0005515
Bma01g01329 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 189 IPR002885 -
Bma01g01329 546 Pfam E motif 439 501 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01329 - - - qsu:112004410 716.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01329 Bma-Chr1:18192951 Bma05g00984 Bma-Chr5:48342511 7.57E-129 dispersed
Bma10g00597 Bma-Chr10:7304652 Bma01g01329 Bma-Chr1:18192951 1.35E-108 dispersed
Bma01g01328 Bma-Chr1:18173621 Bma01g01329 Bma-Chr1:18192951 8.35E-17 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g400 . . . . Bpe02g01199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g01329 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019465 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01329 Bma_Chr01 FPKM 1.190025 1.099808 3.089798 3.140692 1.22168 1.60389 1.640298 3.101923 3.057498 3.289468