Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01330 ATGAGGGACGATGATCGTGAGGGCCACTACGTTTTTAATCTTGGCGAGAATCTCACTCCGAGATTCACTCAGCATGTTGCAAGTGCTGTAGGCACATTTGGTCGAGTTTTGGAATGTTGGGACCGTCAAACACGAGACTATGTGGCCATAAAGGTTGTTCGAAGCATACGAAAATATCGCGATGCAGCAATGATCGAGGTTGATATACTTCAATATCTTGCGAAGAATGACAATGGCAATTCTCGTTGTGTACAGATTCATAGCTGGTTTGACTATCGCAATCACATATGCATCGTGTTTGAGAAGCTTGGACCTAGCTTATTTGACTTTCTAAAGAGAAATAAATACTCTCCATTTCCTTTGGACCTTGTTCGGGAATTTGGACGCCAGCTTTTGGATTCTGTAGCATATATGCATAATTTACGCCTAATCCACACTGATCTGAAGCCAGAAAATATACTTCTTGTGTCTTCTGAATATGTAAAGCTTCCTGGTTGGAAGAGGGTACCATCGGCTGAAATGCAGTTCAGGTGTTTGCCCAAGTCTAGTGCAATTAAGCTGATTGACTTTGGTAGTACTACGTTTGATAATCAGAATCATAGCTCCATTGTTTCTACGAGGCATTACAGAGCCCCTGAGGTTATTCTAGGTCTAGGGTGGAGTTATCCATGTGACTTATGGAGTGTTGGTTGCATACTTGTTGAGCTCTGCACGGGTGAAGCATTATTCCAGACGCATGAGAACTTGGAGCATATGGCAATGATGGAGATGGTGTTGGGACCGTTGCCAGGGCATATGATTCAGAGGGCTAATCAAAGCATGGAAAAGTACTTTAGGAGAGGATCGCATCTCAACTGGCCTGAAGGAGCAGTCTCAAGAGAGAGCATCAGAGCTGTAAAGAAGCTTGATCGTTTAAAGGATATGATATCAAAATGCGTAGAGTCCTCGAGATCCCCAATTACAGATTTGCTGTATGGTTTATTGAAATATGATCCTTCCGAGCGTCTTACAGCCCGTCAAGCCCTCGAACATCCCTTCTTTAAAAGCTAA 1050 43.24 MRDDDREGHYVFNLGENLTPRFTQHVASAVGTFGRVLECWDRQTRDYVAIKVVRSIRKYRDAAMIEVDILQYLAKNDNGNSRCVQIHSWFDYRNHICIVFEKLGPSLFDFLKRNKYSPFPLDLVREFGRQLLDSVAYMHNLRLIHTDLKPENILLVSSEYVKLPGWKRVPSAEMQFRCLPKSSAIKLIDFGSTTFDNQNHSSIVSTRHYRAPEVILGLGWSYPCDLWSVGCILVELCTGEALFQTHENLEHMAMMEMVLGPLPGHMIQRANQSMEKYFRRGSHLNWPEGAVSRESIRAVKKLDRLKDMISKCVESSRSPITDLLYGLLKYDPSERLTARQALEHPFFKS 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18195748 18198581 - Bma001649.1 Bma01g01330 75847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01330 349 Gene3D Phosphorylase Kinase; domain 1 9 102 - -
Bma01g01330 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Bma01g01330 349 PANTHER BNAA07G37640D PROTEIN 2 347 - -
Bma01g01330 349 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 347 - -
Bma01g01330 349 ProSiteProfiles Protein kinase domain profile. 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01330 349 SMART serkin_6 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01330 349 Gene3D Transferase(Phosphotransferase) domain 1 76 347 - -
Bma01g01330 349 SUPERFAMILY Protein kinase-like (PK-like) 29 348 IPR011009 -
Bma01g01330 349 Pfam Protein kinase domain 31 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g01330 349 CDD PKc_CLK 9 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01330 K08287 E2.7.12.1; dual-specificity kinase [EC:2.7.12.1] - pvy:116119292 607.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01330 Bma-Chr1:18195748 Bma08g00077 Bma-Chr8:954251 3.15E-175 dispersed
Bma01g01330 Bma-Chr1:18195748 Bma10g00284 Bma-Chr10:2593562 2.47E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g364 . . . . Bpe02g01198 . . . Cmo05g00634 . . Cma05g00608 . . Sed01g1289 . . Bhi04g00814 Tan02g2583 Cmetu03g0841 . Hepe10g0340 . Lcy13g1385 . . . . . . . . . . Cone20ag0616 . . . Cme03g01723 . Blo18g00067 Bda01g00951 . . . Bma01g01330 . . . . . . . Car05g00551 Cpe11g00531 . . . . . . . . Cla08g01240 Cam08g1698 Cec08g1277 Cco08g1399 Clacu08g1394 . Cre08g1180 Lsi08g01102 . Chy03g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009152 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66281 PF00069 Pkinase 1.60E-48 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01330 Bma_Chr01 FPKM 12.181026 13.583698 8.101543 8.457383 10.382737 9.545815 10.673688 13.600728 13.602633 12.867203