Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01331 ATGTTGCGGCTGGTGATATCTACTGGAAAAATAGCACTTCTTGTATTGCCTTACGTTTCAATATGTGCAGAAAAGGCAGAATACTTAGAGATTCTTCTTGGACCACTTAACAAGCATGTTCGGAGTTATTATGCGAACCAAGGTGGTGGAATGCTTCCTAAAGACACGGCTGTAGCTGTCTGCACAATAGAGAAGGCAAACTCGTTAATAAACAAATTGTTGGAAGAGGGTCGTTTGTCTGAGATTGGAATTATTGTGATAGATGAACTACACATGGTTGGGGATCAGAATAGGGGTTATCTATTAGAGCTCTTGTTGACAAAGCTTCTATATGCAGCTGGTGAAGGAAACTCAGAATCAAGTACTGGTGAAAGCCCTGGATCAAGTAGTGGTAAGACTGATCCTGCTAATGGACTGCAAATTGTTGGCATGAGTGCCACCATGCCAAATGTGGCTGCTGTAGCTGATTGGCTTCAGGCAGCTTTATATCAGACTGACTTCCGTCCTGTTCCATTAGAGGAATATATAAAAGTTGGTAATGTCATTTACTGCAAGAAAATGGATGTTGTTAGAACAATATCAAAAACAGCTGACATCGGTGGCAAGGATCCAGATCATGTCATAGAATTGTGCAATGAAGTTGTTCAGCAGGGTCATTCAGTATTAATCTTTTGTTCAAGTAGAAAAGGATGTGAATCAACTGCAAGACATGTTTCAAAGTATATCAAGAAGTTTTCTACCAATGTTGTCAATGGTAATAGCGAGCTTGTTGATATTGCTTCTGCAATTGATGCATTGAGGAGGTCTCCTGCTGGACTTGATCCTATACTAGAGGAAACACTTCCTTTGGGAGTTGCTTATCACCATGCTGGCCTTACAGTTGAAGAAAGAGAAGTTGTTGAAACTTGCTATCGTAGTGGTCTTTTACGCGTCTTAACTGCTACGTCTACCTTAGCAGCTGGGGTTAATCTTCCAGCAAGAAGGGTCATTTTTCGACAACCTAGGATTGGCCGTGATTTTATTGATGGGACAAGGTATAGACAGATGGCTGGTCGTGCTGGACGAACTGGAATAGATTCAAAAGGAGAGAGTATATTGATATGCAAACCAGAGGAGATCAAAAGAATCAATGTGCTTGTGAATGAAAACTGTCCACCGTTACATTCTTGTTTATCTGAGGATAAGAATGGAATGATACATGCAATTTTAGAAGTTGTGGCTGCTGGAATTGTTCAAACAACTAATGATATTCATCGATATGTAAAGTGTACTCTTCTAAACTCTACAAAACCATTTCAAGATGTGGTGAAATCAGCTCAAGAATCTCTTCGATGGTTGTGCCATAAGAAATTTCTTGAATGGAATGAAGCTACTAAGTTATACAGTACTACACCTCTTGGACGAGCAGCTTTTGGCAGTTCTTTGAATCCAGAAGAGTCACTTGTTGTCTTGGATGATCTTTTAAGGGCTAGAGAAGGCTTTGTGTTAGCATCTGATTTGCATGTAGTATATTTGGTAACACCTGTCAATGTTGAAGTAGAGCCAAATTGGGAATTATACTACAAACAGTTCATGGAATTGTCGACCCTTGATCAGTCAGTTGGTAATCGAGTTGGAGTTGCTGAGCCATTTTTGATGCGTATGGCTCATGGGGCTCCTATGTGCTCTTCAAAAAATTCAACAAGAAGGGTGAAATGGTTTAATGGGAAGGGTCAGAACCAACTTGAGTTTATAAGTAACACAAATCTTTCTGAGGAGCAGTCTGTTCGAGTATGTAAGCGGTTCTATGTTGCTCTCATCTTGTCAAGGCTTATTCAGGAAGCTCCTGTTCGTGAAGTTTGTGAAGCTTTTAAAGTGGCTAGAGGTATGGTACAAGCCTTACAAGAGACCGCGGGAAGATTTGCAGCCATGGTTTCTGCATTCTGTGAGAGGCTAGGATGGAATGATCTGGAAGGCTTGGTAGTTAAGTTTCAAAATCGTGTTTCATTTGGAGTGAGAGCAGAGATTGTAGAGCTTACAACTATTCCATATGTTAAGGGTTCTCGAGCTAGAGCACTCTATAAAGCTGGGCTACGCACACCTCTTTCAATTGCTGAAGCATCCATTACTGATATAGTTAAAGCTCTTTTTGAATCTTCATCATGGACTGCACAAGAAAGTTTGGCAAAAAAAGGGATGCAAATAGGAATGGCAAAGAAGATTAAGCACGGTGCAAGAAAACTTGTTCTGGATAAGGCAGAGGAGGCTAGGATTGCTGCTTTCTCAGCCTTCAAATCATTGGGGTTAGATGTCCATCAAATTCCTGAACCACTACCAACTTCTCCCTTAAGCATTGGCAAGAGCAGTAACGTCGGAGGTGTTCACCTCTTGGAACCTATTCTTGCGAAGCCAAATGTTGAAGAAAGACATCGTTTCAATGTAGTTTTAGAAAGTGAAGAAGGGATAAAGAAAGCACCAAATATTGAACGGCCAATTTCAGAAGAAATTACCATCATTGACACTCGACATGATGTTCGTGTTGAAAACTGTCAATTGGCTGTTGAAAACTCTGTAGTTTTTACCGCTGATGTTGATTTTGCAAGCTATGCAAATACCAATGTCTCTGATCTCTTGGGGAAACAGAGTGATGGAAACCATATTAATGCCTGCAATTTTGATATTGAACGAGAGGAACAATGCAGTAACAAAACTTTATATCCTGCTGGTAGGGATGGTAATACTGTGAAAGGTCCTATAAACGCTAGTAGCACTCCTGGTGGGTTTGATGCATTTTTAGATATCTGGGACATGACTCAGGAATTTTATTTTGACATCCATCATAACAAACGATCTGGAATGAACTCTATTACCCTCTTTGAAATACAGGGTATAGCTATATGTTGGAAAGATTCTCCCGTGTACTACATTAATCTTCCTAAGGATCTGCTATTGTCTGAGAGGCAAAGAAATGATCACATGACTGGGAATGCATCGATAGATAAAGATTCTGTTTCAACACCTGAACATGTGTTAAAGATACTTGAACTTAGATGGAACAGAATCAAAGAAATAATGGGGAAAAGAAATGTTCTAAAGTTTACTTGGAATTTGAAAGTTCAAATTCATGCTCTTAAGAATCCTACTGTCGCGAACCAGAAACTGGGTTGCCTTAATTCTGCCAAGAAAAAAGGTGTCGGTCTTGAACTCGTAAATGGCTTATATTTTATGTTGTCTCCTGTTTATGTGAGACATGGAGTTGATATCTGCATTGTTGCTTGGATACTCTGGCCGGATGATGAAAGGAGCTCAAACCCAAACTTAGAGAAGGAAGTTAAGAAAAGGTTGTCTAGAGAGGCTGCTGCAGCTGCCAACCGAAATGGCCAATGGAAAAATCAGATGACAAGAGCGTCACATAATGGTTGTTGCCGTCGTGTAGCCCAAACAAGAGCTTTATGTTCTGCTCTATGGAAATTAGTGATATCTGAAGAGCTTGTAGAAGCACTCATGAACGTTGAGGTCCCACTGGTCAACGTGCTTGCAGATATGGAGCGTTATGGTATAGGAGTTGATATGGAAGGTTGCCTTCAGGCTCGTCAATTATTGGGGAGAAAGCTACGGTGTCTAGAGACGGAAGCTTATAAACTAGCTGGCATGACTTTTTCGTTGTATACTGCTGCAGATATTGCAAATGTCCTCTATGGACACTTGAAACTTTGCATACCTGAGGGTCACAATAAAGGGAAGCTTCATCCCAGTACTGACAAGCGTTGTTTGGATCTATTGAGGCATGAGCATCCTATTGTTCCTGTTATCAAAGAACATAGGACCTTGGCAAAACTTTTTAACTGTACATTGGGTTCGATTTGCTCCCTAGCAAGGTTATCTCCAATGAGTCAAAAGTACACTCTACATGGTCATTGGCTCCAAACATCCACAGCAACTGGCCGGCTTTCAATTGAGGAACCTAACCTTCAGTGTGTTGAGCATATGGTTGACTTTAAAATGACCAATGATAACAATGGAGGGGGCATCAACCATTACAATATTAACGCACGAGATTTCTTTTTACCTACTCAGGAAAATTGGTTTCTTTTAACAGCAGATTATTCTCAGATAGAGTTACGGCTGATGGCACATTTTTCAAAGGACTCGTCATTAATTGAACTGCTTAATAGGCCTGGTTGTGATATATTTACCATGATAGCAGCTAGATGGACTGGAAAGCCAGAAATTTCTGTTGGTTCTGTGGAGAGAAATCAGACCAAAGGGTTGGTTTACGGCATGCTTTATGGCATGGGTTCCAAAACACTTGCTGAACAATTGGAATGCAGTATTGAGGAAGCTGCTGAAAAAATTCAAAACTTCAAGAGTTCATTTCCAGGTGTTACTTCATGGCTTTATCAAGCAATTGATTATTGCCGTGACAAGGGACACGTGAAAACTCTCAATGGAAGAAAGCGCTTCTTATCAAAAATTAAATTTGGGAACAAAAAAGAAAAATCAAAAGCTCAGAGACAAGTTGTGAATTCAATATGTCAGGGATCTGCTGCTGACATAATAAAGATTGCTATGATTAACCTGTACTCTGTAATTGATGGAGAATGTGATGTGCCAGATTATATCTCATCACATGCAACCAAATTTCACATGCTAAGGAATCAATGCCACATTTTATTACAGGTACATGACGAATTAGTTCTGGAAGTTCATCCTTCTGTGGTAAAGGAAGCAGCGTTGTTGCTGCAAATTTGCATGGAAAATGCTGCTTCACTTCTTGTTCCTTTGCAAGTCAAACTGAAAGTTGGAAGAACGTGGGGTTCCTTGGAGCCTTACACATCTGAAGGATAG 4827 40.27 MLRLVISTGKIALLVLPYVSICAEKAEYLEILLGPLNKHVRSYYANQGGGMLPKDTAVAVCTIEKANSLINKLLEEGRLSEIGIIVIDELHMVGDQNRGYLLELLLTKLLYAAGEGNSESSTGESPGSSSGKTDPANGLQIVGMSATMPNVAAVADWLQAALYQTDFRPVPLEEYIKVGNVIYCKKMDVVRTISKTADIGGKDPDHVIELCNEVVQQGHSVLIFCSSRKGCESTARHVSKYIKKFSTNVVNGNSELVDIASAIDALRRSPAGLDPILEETLPLGVAYHHAGLTVEEREVVETCYRSGLLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGIDSKGESILICKPEEIKRINVLVNENCPPLHSCLSEDKNGMIHAILEVVAAGIVQTTNDIHRYVKCTLLNSTKPFQDVVKSAQESLRWLCHKKFLEWNEATKLYSTTPLGRAAFGSSLNPEESLVVLDDLLRAREGFVLASDLHVVYLVTPVNVEVEPNWELYYKQFMELSTLDQSVGNRVGVAEPFLMRMAHGAPMCSSKNSTRRVKWFNGKGQNQLEFISNTNLSEEQSVRVCKRFYVALILSRLIQEAPVREVCEAFKVARGMVQALQETAGRFAAMVSAFCERLGWNDLEGLVVKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLSIAEASITDIVKALFESSSWTAQESLAKKGMQIGMAKKIKHGARKLVLDKAEEARIAAFSAFKSLGLDVHQIPEPLPTSPLSIGKSSNVGGVHLLEPILAKPNVEERHRFNVVLESEEGIKKAPNIERPISEEITIIDTRHDVRVENCQLAVENSVVFTADVDFASYANTNVSDLLGKQSDGNHINACNFDIEREEQCSNKTLYPAGRDGNTVKGPINASSTPGGFDAFLDIWDMTQEFYFDIHHNKRSGMNSITLFEIQGIAICWKDSPVYYINLPKDLLLSERQRNDHMTGNASIDKDSVSTPEHVLKILELRWNRIKEIMGKRNVLKFTWNLKVQIHALKNPTVANQKLGCLNSAKKKGVGLELVNGLYFMLSPVYVRHGVDICIVAWILWPDDERSSNPNLEKEVKKRLSREAAAAANRNGQWKNQMTRASHNGCCRRVAQTRALCSALWKLVISEELVEALMNVEVPLVNVLADMERYGIGVDMEGCLQARQLLGRKLRCLETEAYKLAGMTFSLYTAADIANVLYGHLKLCIPEGHNKGKLHPSTDKRCLDLLRHEHPIVPVIKEHRTLAKLFNCTLGSICSLARLSPMSQKYTLHGHWLQTSTATGRLSIEEPNLQCVEHMVDFKMTNDNNGGGINHYNINARDFFLPTQENWFLLTADYSQIELRLMAHFSKDSSLIELLNRPGCDIFTMIAARWTGKPEISVGSVERNQTKGLVYGMLYGMGSKTLAEQLECSIEEAAEKIQNFKSSFPGVTSWLYQAIDYCRDKGHVKTLNGRKRFLSKIKFGNKKEKSKAQRQVVNSICQGSAADIIKIAMINLYSVIDGECDVPDYISSHATKFHMLRNQCHILLQVHDELVLEVHPSVVKEAALLLQICMENAASLLVPLQVKLKVGRTWGSLEPYTSEG 1608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18242597 18263426 + Bma001650.1 Bma01g01331 75848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01331 1608 PRINTS DNA-polymerase family A (pol I) signature 1448 1459 IPR002298 GO:0003887|GO:0006261
Bma01g01331 1608 PRINTS DNA-polymerase family A (pol I) signature 1470 1481 IPR002298 GO:0003887|GO:0006261
Bma01g01331 1608 PRINTS DNA-polymerase family A (pol I) signature 1502 1518 IPR002298 GO:0003887|GO:0006261
Bma01g01331 1608 PRINTS DNA-polymerase family A (pol I) signature 1411 1436 IPR002298 GO:0003887|GO:0006261
Bma01g01331 1608 PRINTS DNA-polymerase family A (pol I) signature 1296 1318 IPR002298 GO:0003887|GO:0006261
Bma01g01331 1608 MobiDBLite consensus disorder prediction 117 136 - -
Bma01g01331 1608 Pfam Helicase conserved C-terminal domain 205 357 IPR001650 -
Bma01g01331 1608 SUPERFAMILY Ribonuclease H-like 913 1150 IPR012337 -
Bma01g01331 1608 SUPERFAMILY DNA/RNA polymerases 1157 1601 IPR043502 -
Bma01g01331 1608 PANTHER DNA POLYMERASE THETA 1 1606 - -
Bma01g01331 1608 Gene3D Taq DNA Polymerase; Chain T, domain 4 1178 1287 - -
Bma01g01331 1608 SMART helicmild6 275 357 IPR001650 -
Bma01g01331 1608 CDD DNA_pol_A_theta 1179 1601 - -
Bma01g01331 1608 Gene3D - 916 1177 IPR036397 GO:0003676
Bma01g01331 1608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 172 IPR027417 -
Bma01g01331 1608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 385 IPR027417 -
Bma01g01331 1608 PANTHER DNA POLYMERASE I 1 1606 IPR002298 GO:0003887|GO:0006261
Bma01g01331 1608 Pfam DEAD/DEAH box helicase 9 150 IPR011545 GO:0003676|GO:0005524
Bma01g01331 1608 Gene3D - 180 377 IPR027417 -
Bma01g01331 1608 Gene3D - 1305 1598 - -
Bma01g01331 1608 Pfam DNA polymerase family A 1187 1599 IPR001098 GO:0003677|GO:0003887|GO:0006260
Bma01g01331 1608 SMART polaultra3 1341 1566 IPR001098 GO:0003677|GO:0003887|GO:0006260
Bma01g01331 1608 CDD SF2_C_Ski2 168 369 - -
Bma01g01331 1608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 206 398 IPR001650 -
Bma01g01331 1608 Gene3D - 551 688 - -
Bma01g01331 1608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 166 IPR014001 -
Bma01g01331 1608 SUPERFAMILY Sec63 N-terminal domain-like 588 703 - -
Bma01g01331 1608 Gene3D - 1365 1509 - -
Bma01g01331 1608 Coils Coil 1431 1451 - -
Bma01g01331 1608 Coils Coil 1105 1125 - -
Bma01g01331 1608 Gene3D - 1 169 IPR027417 -
Bma01g01331 1608 Pfam Helix-turn-helix domain 362 453 IPR046931 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01331 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7] - vvi:100264582 2271.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01331 Bma-Chr1:18242597 Bma13g00534 Bma-Chr13:11162707 1.63E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g343 . . . . Bpe02g01197 . . . Cmo05g00632 . . Cma05g00730 . . . . . Bhi04g00821 . . . . . . . . . . . . . . . Cone17ag1106 . . . . Cme03g01725 . Blo18g00068 . . . . Bma01g01331 . . . . . . . Car05g00549 Cpe11g00651 . . . . . . . . Cla08g01238 Cam08g1696 Cec08g1275 Cco08g1396 Clacu08g1393 . Cre08g1178 Lsi08g01101 . Chy03g01230 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007306 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01331 Bma_Chr01 FPKM 4.745652 6.543818 12.810546 12.583236 4.717018 6.532818 4.036446 13.204926 14.88283 15.895417