Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01343 ATGAAAGTTCTGGAAGCTGGACTCCTATTGTATCCCAAAGTTCCAGTCGATAAGTCGAATACTTCAGCCCAAAGGCTGAGACAGATGATCCAAGCCGCATTGGATAGACCCATCGAAACTGGAAAAAACAATGAGACTTTGCAATTACTTCGCAGTGCTGTAATGTCTCTTGCTTCCAGGTCCTTTGATGGGTCTCTAAACGAATCTTGCCACTGGGCAGACGGATGTCCACTAAATCTTCGGCTATATGAGAAGCTACTTGAAGCCTGTTTTGATGCCAATGACGATACATCTATGATCGAAGAAGTTGATGAACTAATGGAACACATTAAGAAAACTTGGGGAATTCTGAGACTTGATCAAATGCTTCATAACCTTTGCTTCACCTGGGTTTTATTTAATCGTTTTGTCGCAACTGGCCAAGTTGAAATGGACTTACTTTATGCTGCTGAAAGTCAGCTGGCAGAAGTGGCTAAAGATGCAAAAACAACTAAGGATCCTGAATATTCCAAGATTCTGAGTTCTACATTGACAGCAATGCTCGGTTGGGCGGAAAAAAGGCTCCTTGCATATCATGATACGTTTGATAGGGGAAATATCGATACAATGGAAGGCATAGTTTCATTGGGGGTATCTGCTGCTAAGATTTTAGTAGAAGATATATCGAATGAATACCGTAGGAGGAGGAAGGGTGATGTTGATGTAGCTCGAAACAGGATTGATACATATATCAGGTCGTCTTTACGCACTGCTTTTGCCCAGAAAATGGAGAAAGCAGATTCAAGTAGGAGGGCATCTAAAAACCAGCCAAATTGTCTACCTGTCCTTGCCATCCTTGCAAAGGATGTCGGTGAGCTGGCAGTCACTGAAAAACAGGTATTCAGTCCAATACTGAAGAGATGGCATCCTTTAGCTGCAGGTGTGGCTGTGGCCACACTTCATGCATGTTATGGAAATGAGATTAAACAATTCATGTCGAGCGTCACGGAGTTAACGCCTGACGCCATACAAGTCTTGAGGGCTGCTAATAAGCTGGAAACTGATCTAGTTCAGATAGCTGTGGAAGATTCAGTCGACAGTGATGATGGTGGAAAGGCAATAATCCGAGAGATGCCTCCATTTGAGGCTGAATCTGTGATGGCCAATTTAGTCAAAGTGTGGATGAAAGCAAGACTGGACAGAATGAAGGAATGGGTTGATAGAAATCTGCAACAAGAGGCATGGAATCCACTAGAAAATCAAGAAGGTTTTGCTCCATCTGCTGTTGAGGTTCTGAGAATTATCGATGAAACGTTAGATGCCTACTTTCAGCTTTCAATTCCAATGCACCCAACTTTACTTCCTGATTTGGTGGCTGGTCTTGACAGATGTCTTCAATATTATATCACCAAGGCAAAATCTGGCTGCGGATCTAGAAATACATTTGTTCCTTCTATGCCAGCATTGACCAGATGTACAATAGGATCGAAATTCCAAGGATTTGGGAAGAAGAAAGAAAAATCAGTGAATCCACAGAGGAGGAATTCTCAAGTTGCAACAATGAATGGGGATAGTTCATTTGGTATACCACAGCTTTGTGTTAGAATAAACACTTTGCATCGAATTCGAAGTGAATTGGAAGTCATCGAGAAACGAATAATCACCCATCTCAGGAACTCTGAATCTGCCCATACAGAAGACTTTTCAAATGGTTTGGGAAAAAAGTTTGAACTTTCGCCTGGAGCTTGCGTCGAAGGCGTTCAACAACTCTGTGAGGCAGCCGCTTATAAAATAGTTTTCCACGATCTAAGCCATGTTCTATGGGATGGTTTGTATGTGGGGCAGCCCTCATCTTCTAGAATTGAGCCTTATCTGCAAGAACTCGAGAGGCGATTGTTGATCATCACAGATACTGTGCATGAAAGAGTTCGGACCAGAATGATTACGGACTTAATGAAAGCTTCTTTCGACGGCTTCCTACTGGTTTTATTCGCCGGGGGACCTTCTCGGGCCTTCTCTAAGCAGGATTCCCAAATAATCGAAGAGGACTTCATCTTGTTGAAGGATCTATTCTGGGCCAATGGAGATGGCTTACCTTCTGAGTTGGTCGAAAAGTTTTCGGGTACTGCTGTAGATGTTCTACCCCTTTTCCGAACCGACACAGAGAGCCTCATTGAGCGGTTTAAGCGGGTGACTCTGGAGACATACGGCTCTTCGGCAAGATCTAGGCTCCCACTTCCTCCCACTTCCGGCCAGTGGAATCCCGTCGAGCCAAACACTCTCCTACGCGTTTTGTGCTATCGGAATGATGAAGCCGCATCAAAGTTCTTGAAGAAAACTTACAATCTGCCTAAGAAGCTGTGA 2343 43.7 MKVLEAGLLLYPKVPVDKSNTSAQRLRQMIQAALDRPIETGKNNETLQLLRSAVMSLASRSFDGSLNESCHWADGCPLNLRLYEKLLEACFDANDDTSMIEEVDELMEHIKKTWGILRLDQMLHNLCFTWVLFNRFVATGQVEMDLLYAAESQLAEVAKDAKTTKDPEYSKILSSTLTAMLGWAEKRLLAYHDTFDRGNIDTMEGIVSLGVSAAKILVEDISNEYRRRRKGDVDVARNRIDTYIRSSLRTAFAQKMEKADSSRRASKNQPNCLPVLAILAKDVGELAVTEKQVFSPILKRWHPLAAGVAVATLHACYGNEIKQFMSSVTELTPDAIQVLRAANKLETDLVQIAVEDSVDSDDGGKAIIREMPPFEAESVMANLVKVWMKARLDRMKEWVDRNLQQEAWNPLENQEGFAPSAVEVLRIIDETLDAYFQLSIPMHPTLLPDLVAGLDRCLQYYITKAKSGCGSRNTFVPSMPALTRCTIGSKFQGFGKKKEKSVNPQRRNSQVATMNGDSSFGIPQLCVRINTLHRIRSELEVIEKRIITHLRNSESAHTEDFSNGLGKKFELSPGACVEGVQQLCEAAAYKIVFHDLSHVLWDGLYVGQPSSSRIEPYLQELERRLLIITDTVHERVRTRMITDLMKASFDGFLLVLFAGGPSRAFSKQDSQIIEEDFILLKDLFWANGDGLPSELVEKFSGTAVDVLPLFRTDTESLIERFKRVTLETYGSSARSRLPLPPTSGQWNPVEPNTLLRVLCYRNDEAASKFLKKTYNLPKKL 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18839867 18843745 - Bma001665.1 Bma01g01343 75860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01343 780 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 336 479 IPR014770 -
Bma01g01343 780 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 611 721 IPR014772 -
Bma01g01343 780 Gene3D - 374 571 - -
Bma01g01343 780 PANTHER PROTEIN UNC-13 HOMOLOG 1 780 IPR008528 -
Bma01g01343 780 PANTHER ELONGATION FACTOR TS (DUF810) 1 780 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01343 - - - zju:107420474 1338.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01343 Bma-Chr1:18839867 Bma02g00757 Bma-Chr2:38882733 0 dispersed
Bma06g00820 Bma-Chr6:41861634 Bma01g01343 Bma-Chr1:18839867 0 transposed
Bma08g00873 Bma-Chr8:46938388 Bma01g01343 Bma-Chr1:18839867 7.94E-91 transposed
Bma12g00095 Bma-Chr12:1615939 Bma01g01343 Bma-Chr1:18839867 4.86E-81 transposed
Bma01g01343 Bma-Chr1:18839867 Bma02g00086 Bma-Chr2:712340 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g288 . . . . Bpe02g01184 Bpe02g00248 . . Cmo05g00616 Cmo12g00203 . Cma05g00591 . Car12g00235 Sed01g1263 Cpe07g00213 . Bhi04g00855 Tan02g2557 Cmetu03g1871 . Hepe10g0368 . Lcy13g1418 . . . . . . . . . Cone17ag1126 Cone20ag0596 . . . Cme03g01747 Blo17g00067 . Bda01g00938 Bda13g01330 Bpe14g00518 . Bma01g01343 . . . . . Cma12g00250 . Car05g00535 Cpe11g00517 . . . . . . . . Cla08g01220 Cam08g1679 Cec08g1257 Cco08g1377 Clacu08g1377 . Cre08g1162 Lsi08g01083 . Chy03g01251 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001480 3 2 5 2 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 3 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01343 Bma_Chr01 FPKM 7.648156 6.201937 8.580486 9.131473 13.897422 12.520831 13.52652 4.296508 4.354183 4.836965