Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01347 ATGAGAGATACCAGCAGGCACCCACCTTTCAGAGGCGTTCGGATGCGCAGTTGGGGAAAATGGGTGTCTGAAATTCGCGAGCCTCGCAAGAAATCGCGCATTTGGCTTGGAACTTTCCAGACGCCAGAAATGGCCGCCAGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGTAATTCCGCAATTCTTAACTTCCCCAACCTCGTTGACTCTCTTCCACGCCCGGTATCTCTCGCTCCGAGAGATGTCCAAGCGGCGGCAGTGAAGGCAGCTCAGATGTACAAATTTGAGTCGGCATCTTCGACGCCGTCGTCGTCGTTAGTTTCGGTTGGGTCGACGGAGAAAGAATCGGACGATTTGGGGGAGATCGTTGAGCTGCCGAGCTTAGGAACGAGTTACGAGTCGAACGAGTTGAGGAACGAAATCGTGTTGGTGGACTCAGTGGATGGGTGGTTATACCAACCGCCATGGTTGCAAAGCTTGGAGGATAGTGGATTCAACAATGCGAGCGAGGAGTTGACTGCCGGAAGTTGCGGTTTGATAGCCGGCAGTTTTGAGAGTTTGTTTTGGGAGTATTGA 579 52.68 MRDTSRHPPFRGVRMRSWGKWVSEIREPRKKSRIWLGTFQTPEMAARAHDVAALSIKGNSAILNFPNLVDSLPRPVSLAPRDVQAAAVKAAQMYKFESASSTPSSSLVSVGSTEKESDDLGEIVELPSLGTSYESNELRNEIVLVDSVDGWLYQPPWLQSLEDSGFNNASEELTAGSCGLIAGSFESLFWEY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19155929 19156507 - Bma001673.1 Bma01g01347 75864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01347 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 191 - -
Bma01g01347 192 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Bma01g01347 192 Gene3D AP2/ERF domain 9 67 IPR036955 GO:0003700|GO:0006355
Bma01g01347 192 CDD AP2 10 68 IPR001471 GO:0003700|GO:0006355
Bma01g01347 192 SUPERFAMILY DNA-binding domain 10 67 IPR016177 GO:0003677
Bma01g01347 192 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Bma01g01347 192 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Bma01g01347 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 4 191 - -
Bma01g01347 192 Pfam AP2 domain 10 58 IPR001471 GO:0003700|GO:0006355
Bma01g01347 192 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01347 Bma-Chr1:19155929 Bma07g00513 Bma-Chr7:6393305 9.95E-62 dispersed
Bma01g01347 Bma-Chr1:19155929 Bma04g00408 Bma-Chr4:3312757 2.47E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56722 PF00847 AP2 9.20E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01347 K09286 - zju:107420677 257.299