Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01350 ATGGAAATCGATAGAGAGGATGGGCGTACGCCAAACCAGCTAAGACCACTTGCTTGTTCCTGCAATATCCTCCATCGATCTCATGGCTCTGCCAGTTGGTCTCAAGGAGATACGAAAGTACTTGCTGCTATTTACGGACCGAAAGCGGGTACGCGGAAGAATGAAAACCCCGAGAAAGCTTGCTTTGAGGTTATTTGGAAGCCCAAAACCGGGCAAATTGGGAAACTGGAAAAGGAGTATGAGATGATACTAAAGAGAACTTTGCAGAGTATCTGCATTTTGAACATCAATCCAAATACAACCACCTCGGTGATAATTCAGCTTCTTCCCTGTGCCATAAATGCCGCATGTGCTGCCCTTGTAGATGCTGGAATTCCATTAAAGCACCTTGCTGGTAGTAAAAATTTATACAAATGTGCATGCTATTCAATTGATAATTTGACCCTTGCTGACCATGCTATGCTGGTTTATGCAGTTTCAATATCTTGTTGTTTGCAAGCAAGTGGATGTGTAGTTTTGGACCCTACAAAAGCCGAAGAGCAGAAGATGAAGGCTTTTGCATATCTGGTCTTCCCAAACTCACCCATCTCTGTTATTCCCGAAGGATCATCACGTACCGAAGGTGAACCAATTGAAAATGGGCTCATAACTTCTGTGACTCAGGGTGTAATGCTAGTGGAGGATTATGTTGACTGCCTAGAACGAGGGCGTGCAGCTAGTGCGAAAATGTCTGCTTTCCTTAGGAGAAGTTTGCTGCCCAAAGACAACCAAACCGATTCATTCATTGCCAGGTAA 795 44.28 MEIDREDGRTPNQLRPLACSCNILHRSHGSASWSQGDTKVLAAIYGPKAGTRKNENPEKACFEVIWKPKTGQIGKLEKEYEMILKRTLQSICILNINPNTTTSVIIQLLPCAINAACAALVDAGIPLKHLAGSKNLYKCACYSIDNLTLADHAMLVYAVSISCCLQASGCVVLDPTKAEEQKMKAFAYLVFPNSPISVIPEGSSRTEGEPIENGLITSVTQGVMLVEDYVDCLERGRAASAKMSAFLRRSLLPKDNQTDSFIAR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20177825 20180445 + Bma001681.1 Bma01g01350 75867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01350 264 Pfam 3' exoribonuclease family, domain 1 13 126 IPR001247 -
Bma01g01350 264 SUPERFAMILY Ribosomal protein S5 domain 2-like 11 125 IPR020568 -
Bma01g01350 264 PANTHER EXOSOME COMPLEX COMPONENT RRP46 153 251 - -
Bma01g01350 264 PANTHER EXOSOME COMPLEX COMPONENT RRP46 1 131 - -
Bma01g01350 264 SUPERFAMILY Ribonuclease PH domain 2-like 154 252 IPR036345 -
Bma01g01350 264 CDD RNase_PH_RRP46 14 248 - -
Bma01g01350 264 Gene3D - 1 260 IPR027408 -
Bma01g01350 264 PANTHER EXOSOME COMPLEX COMPONENT 153 251 - -
Bma01g01350 264 PANTHER EXOSOME COMPLEX COMPONENT 1 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01350 K12590 RRP46, EXOSC5; exosome complex component RRP46 - csv:101205616 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01350 Bma-Chr1:20177825 Bma14g01129 Bma-Chr14:14324183 1.44E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g240 . . . . . . . . . Cmo12g00227 . . . . Sed08g1434 . . Bhi04g01115 Tan02g2596 Cmetu01g1445 . Hepe10g0330 . Lcy13g1369 . . . . . . . . . . Cone20ag0621 . . . Cme03g01712 . . Bda01g00957 . . . Bma01g01350 . . . . . Cma12g00273 . . . . . . . . . . . Cla08g01251 Cam08g1709 Cec08g1289 Cco08g1410 Clacu08g1406 . Cre08g1190 . Csa02g02304 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012378 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01350 Bma_Chr01 FPKM 0.0 0.0 1.998153 1.887652 0.392672 0.0 0.0 0.57407 1.372229 2.099651