Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01355 TATTTTGCAGGTAGAGCCATTGAGAAGCCAATTCAGAGAACTGGAAAGGTTGAGGATCTAAACGAAGAAGATGAGCAGGGTCTGAATATGAGGAAGCTGATAGGGTCGAGGCCTCCAAGCTGCGAGAAAAGATGCAGAGGGTGTGGATATTGTGAAGCAGTCCAGGTCCCCATTCTTCCTCAAGAATTACAGCATGAAAGAAGAAGAACAGTAAAGGCTAAGAACTCCATAGATGATTACTCAAGAGGAGATTATATCTCCAACTACAAACCTTTGAGTTGGAAATGCAAGTGTGGGGATTTCATTTTCAATCCTTGA 318 42.77 YFAGRAIEKPIQRTGKVEDLNEEDEQGLNMRKLIGSRPPSCEKRCRGCGYCEAVQVPILPQELQHERRRTVKAKNSIDDYSRGDYISNYKPLSWKCKCGDFIFNP 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20307451 20307768 + Bma001687.1 Bma01g01355 75872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01355 105 Pfam Epidermal patterning factor proteins 34 105 - -
Bma01g01355 105 PANTHER OS07G0132300 PROTEIN 17 105 - -
Bma01g01355 105 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4 17 105 IPR039455 GO:0010374
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01355 - - - zju:107420902 114.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01355 Bma-Chr1:20307451 Bma06g00875 Bma-Chr6:43540708 1.74E-12 dispersed
Bma03g01177 Bma-Chr3:17171788 Bma01g01355 Bma-Chr1:20307451 6.14E-26 transposed
Bma09g00027 Bma-Chr9:575136 Bma01g01355 Bma-Chr1:20307451 2.18E-17 transposed
Bma09g00164 Bma-Chr9:5796424 Bma01g01355 Bma-Chr1:20307451 2.00E-22 transposed
Bma01g01355 Bma-Chr1:20307451 Bma04g00417 Bma-Chr4:3387058 1.11E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g587 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0186 . . . . . Blo17g00077 Blo18g00089 . Bda13g01338 Bpe02g01175 Bpe14g00509 Bma01g01355 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001227 3 3 2 3 3 2 4 2 2 3 2 2 3 2 2 4 2 1 4 2 2 2 3 2 2 2 2 6 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01355 Bma_Chr01 FPKM 3.426117 2.944343 0.0 0.798291 0.0 0.0 0.711284 0.0 0.0 0.0