Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01358 ATGGAGGACTTATCTCTCCCTCTCGACTCTTACTTTCTCGGATTTGATAGTTCTACTCAGTCCTTGAAAGCAACTGTGTTGGATTCCAATTTCAAAATTGTTGCCTCTGAGCTGGTTCACTTTGACTCTGAGTTGCCTCATTACGAAACCAAAGATGGAGTTTATAGGGATTCCTCCATTAATGGTCGGATTGTTTCACCCACCATTATGTGGGTAGAAGCATTGGATCTCATGCTTCAGAAACTCTCCAAATCAAACCTCGACTTTCAGAAAATCTCTGCTATCTCTGGTAGTGGACAGCAACATGGAAGTGTGTATTGGATGAAAGGAAGTGCTGCAGTATTATCATCCTTGGATTCAAAGAAGCCATTGACCAGCCAACTGAGAGATGCTTTTTCGATAAAGGAATCCCCAATTTGGATGGACAGTAGCACCACAGCTCAATGTAGACTGATTGAGGAAGCTGTTGGAGGGGCTCTTGAATTATCCCGTTTGACAGGATCACGGGCCTATGAACGATATACGGGTCCACAAATTAGGAAGATATTTGAAATGCAGCCGAATGTGTATGATGATACGGACAGAATTTCTCTCGTTAGTTCATTCATGGCCTCTATTTTTATCGGTGCTTATGCATGTATCGATGAAACGGATGGTGCTGGCATGAACTTGATGGATATAAAGCAACGGGCTTGGTCTAAGAGAGCACTAGAGGCCACTGCTCCTGGCTTGGAAGAAAAGCTTGGAAAGTTAGCCCCTGCATTTTCTGTTGCTGGCTATATTGCTCCCTACTTTGTGGAGAGGTTCGGCTTTAACCGTAATTGCTTAATCATTCAATGGTCAGGGGACAACCCAAACAGCCTAGCAGGTCTAACTCTTAGTACCCCGGGAGACTTGGCAATCAGCCTCGGCACTAGCGACACGGTTTTTGGCATTACTAGTGATCCTCAGCCCAAACTGGAGGGTCATATCTTCCCTAATCCTGTTGACATTGAAGGCTACATGGTGATGCTGGTCTACAAGAACGGATCCTTAATGCGTGAAGATGTTCGGGATCGTTGTGCGAAGAAATCGTGGGAAACTTTTAATGATTACTTGCAGAAAACACCACCTTTGAATGGTGGAAAAATCGGATTTTATTACAAGGAGCATGAAATTCTTCCTCCTCTTCCAGTCGGTTTTCATCGATATGTTCTTGAAGATTTCTCGGGCGATGCTTACGAGGGACTGAAAGAACGAGAAGTTAACGATTTTGATCCTCCCTCCGAGGTGAGGGCATTGATCGAAGGCCAGTTTCTGTCGATGAGAGCTCATGCCGAGAGATTCGGAATGCCGTCTCCTCCAAATCGCATAATAGCTACTGGTGGAGCTTCTGCAAATATGACCATACTCAGCTCAATGGCTGCAATCTATGGCTGTGATATCCATACAGTTCAGAGGCCTGATTCTGCTTCCCTCGGAGCTGCGTTGAGGGCTGCTCATGGCTGGTTGTGCGACAAGAAGGGTGGATTTGTGCCCATTTCATGCATGTACAAGGACAAGTTAGACGACTCGTCGCTTAGCTGTAAGCTGTCCATGGCGGCCGGAGAGCCTCGACTAGTTGCCAAGTATGATTCGCTGATGAGGAAGAGAATGGAAATTGAGAACCGACTCGTCCAAAAGCTTGGAAGATGCTAA 1677 45.74 MEDLSLPLDSYFLGFDSSTQSLKATVLDSNFKIVASELVHFDSELPHYETKDGVYRDSSINGRIVSPTIMWVEALDLMLQKLSKSNLDFQKISAISGSGQQHGSVYWMKGSAAVLSSLDSKKPLTSQLRDAFSIKESPIWMDSSTTAQCRLIEEAVGGALELSRLTGSRAYERYTGPQIRKIFEMQPNVYDDTDRISLVSSFMASIFIGAYACIDETDGAGMNLMDIKQRAWSKRALEATAPGLEEKLGKLAPAFSVAGYIAPYFVERFGFNRNCLIIQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITSDPQPKLEGHIFPNPVDIEGYMVMLVYKNGSLMREDVRDRCAKKSWETFNDYLQKTPPLNGGKIGFYYKEHEILPPLPVGFHRYVLEDFSGDAYEGLKEREVNDFDPPSEVRALIEGQFLSMRAHAERFGMPSPPNRIIATGGASANMTILSSMAAIYGCDIHTVQRPDSASLGAALRAAHGWLCDKKGGFVPISCMYKDKLDDSSLSCKLSMAAGEPRLVAKYDSLMRKRMEIENRLVQKLGRC 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20320033 20323471 + Bma001690.1 Bma01g01358 75875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01358 558 PANTHER SUGAR KINASE 1 558 - -
Bma01g01358 558 CDD FGGY_D-XK_euk 11 494 IPR042024 GO:0004856|GO:0042732
Bma01g01358 558 SUPERFAMILY Actin-like ATPase domain 10 290 IPR043129 -
Bma01g01358 558 SUPERFAMILY Actin-like ATPase domain 295 496 IPR043129 -
Bma01g01358 558 Gene3D - 13 511 - -
Bma01g01358 558 PANTHER XYLULOSE KINASE-LIKE ISOFORM X1 1 558 - -
Bma01g01358 558 Gene3D - 293 478 - -
Bma01g01358 558 PIRSF GlpK 129 501 IPR000577 GO:0005975|GO:0016301
Bma01g01358 558 PIRSF GlpK 9 118 IPR000577 GO:0005975|GO:0016301
Bma01g01358 558 Pfam FGGY family of carbohydrate kinases, N-terminal domain 11 288 IPR018484 GO:0005975|GO:0016773
Bma01g01358 558 Pfam FGGY family of carbohydrate kinases, C-terminal domain 299 495 IPR018485 GO:0005975|GO:0016773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01358 K00854 xylB, XYLB; xylulokinase [EC:2.7.1.17] - tcc:18591893 919.842
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g578 . . Bda01g00929 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1150 . . . . . . Blo18g00090 . . Bpe02g01173 . Bma01g01358 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010528 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01358 Bma_Chr01 FPKM 17.67123 17.872038 24.384867 26.844351 16.569904 16.580959 16.462927 29.446104 29.363371 29.034552