Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01363 ATGGGTACTGGATGGCGAAGTGCCTTCTGCACTACTGTTTCTCGAGATCCAGGATCCGATAAATTGGAGAAGAAAAAGAGAAGCTCTAGTCCTAGCCCTAGTCCGAGAAGCTGCGTGAGATTAGGCTTCCTCTCTGGCGGAAGCAATTCTTCGACTCCGCGCTCGCAGCTGTCTCCGCCAATCTTGAGCCCCACCTTGCGCTGCAGAACAACGTCGCAAGAAGCCGTTCAAACGGCTAACGCGAAGTCCCTGAGAATAGCTTTGGGCTCAAACCCTTCTTCCCCTCGATCTCCTCTCAAGCTGTCTCTCTTCAGAAGCAACTTCAAGTTCAGGAGTAGCTGCGGAATCTGTCTGAACAGCGTCAAAACTGGTCAGGGGACAGCCATCTACACGGCGGAGTGTGCTCATGCCTTTCATTTTCCTTGCATCGCCGCTCATGTCGGAAAACATAACACCCTCATCTGCCCAGTTTGTAACACCACCTGGAAAGACGTTCCGATGCTCTCCATCCATAAAAACGCCGTCTTTAAGTCGCCGGAACACCCAGAAGAAGTGGTTGTTTATCAGAACATCGTAAAACCCAAAACAGAAGACAAAAAAATGATAGATTCATCTCCAAGAGCCTGTAAAGTTAACCGAGACCACGTGCTGCGGCAGCTCAAGAATAAAACGGCCTACGATGACGACGAGCCTCTTCTATCTCCGACCTCGGGTGGTCGGATAATCCCAATTCCGGAGGCTGAAGAAAACGACGACGAAGAGTTTCAGGGATTCTTCGTTAATTCTGAAACATCTTCAATCAAGTCATATCGGTCAGACTCAGAAATCAACCAGAGGGAATTGAGGGGGAACGTACAAGCTAGATTTCTTCCGGAATCAGCTCTAATATCAACTTGCCATGGTACCGAAACTCACGTCGTTGCTTTACGAGTCAAAGCGCCTCCTCCGCCTTCTTCTCGCGGCAGTAGCAGCTCTCTCCTTTTCCAACCTTCACACAGAGCGCCCATCGATTTAGTGACAGTGCTTGACGTGAGTGGGAGCATGAGTGGCGCTAAATTGTTTATGCTGAAGCGCGCTATGCGCTTAGTGATATCGTCTCTTACCTCCGCGGACCGCCTTTCCATCGTCCCATTCTCTGCAACTGCAAGGCGTTTATTGCCTCTTAAAAGAATGACCTCTTCCGGCCAGCTGGAGGCTAGGAAGATAATCGAGAGGCTCGTCTGTGGTCAAGGGAAAAGCGTTGGGGAAGCCTTGAGAAAGGCTACCAGAGTGCTGGAAGATCGAAGGGATAAGAATCCTGTTGCCAGTATAATGCTTTTATCAGACGGTCAGGATGAAAGGGTCGGTAACCAGAGAAGAAATCAACGGCAGGAGATGAGGTCGAACGAATCTTCTACTCGATTCGCTCACATTGAGATTCCTGTTCATGAGTTTGGGTTCGGCGAACATGGGCGGCGATACACCAACGAACCGGCGGAGGAGGCCTTTGCAAAATGTATTGGTGGGCTGTTAAGTGTTGTGGTCCAGGACTTAAGGATTCAGCTCAGTTTTCAATCCGGATCTTCTCGGGCTGAGATTTCCGCCATTTATTCCGCCAATGGAAGACCAACAGTCTGTAGTTCTGGCTCTGTGCGTCTCGGAGATTTGTACGCCGAGGAAGATAGAGAGTTACTGGTGGAGCTCAAACTTGCATCTTCGGCGGTCGACTTCCACCGCGTGATCTCAGTTCGGTGCCTTTACAAAGACCCTTCGACCCAAGAGGTTGTTTATGGCAAAGAACAAGGGCTTCTCATACCTCATCTGCAATCCAGTCGAACGTCGGCGCCGAAAGCAGAGCGCTTGAGAAATCTATTCATCACTACTCGTGCTGTAGCCGAATCGCGGAGATCCATCGAGCACGACGACTATACGAGTGCCCACCGCCTGCTGTCGTCTGCCCGAGCTCTCCTCACGCAGTCGAGCTCGATATCAGCCGATGAATACATTCGAGCTTTAGAGGCGGAGCTCGCAGAGCTTCAATGGCGAAGACAGCAAATAATGACCCACCGGAGAAGAGGCAGCGATCGAGACACAATAGGATCCTTAATGGAGCAAAACGATGAGGAGCTAACGCCTACATCGGCTTGGAGAGCAGCTGAGAGGCTGGCTAAAGTAGCCATGATGAAGAAGTCGTTAACCAGTACAGTCAGCGACTTACACGGCTTCGAAAACGCCAGATTTTAA 2223 50.47 MGTGWRSAFCTTVSRDPGSDKLEKKKRSSSPSPSPRSCVRLGFLSGGSNSSTPRSQLSPPILSPTLRCRTTSQEAVQTANAKSLRIALGSNPSSPRSPLKLSLFRSNFKFRSSCGICLNSVKTGQGTAIYTAECAHAFHFPCIAAHVGKHNTLICPVCNTTWKDVPMLSIHKNAVFKSPEHPEEVVVYQNIVKPKTEDKKMIDSSPRACKVNRDHVLRQLKNKTAYDDDEPLLSPTSGGRIIPIPEAEENDDEEFQGFFVNSETSSIKSYRSDSEINQRELRGNVQARFLPESALISTCHGTETHVVALRVKAPPPPSSRGSSSSLLFQPSHRAPIDLVTVLDVSGSMSGAKLFMLKRAMRLVISSLTSADRLSIVPFSATARRLLPLKRMTSSGQLEARKIIERLVCGQGKSVGEALRKATRVLEDRRDKNPVASIMLLSDGQDERVGNQRRNQRQEMRSNESSTRFAHIEIPVHEFGFGEHGRRYTNEPAEEAFAKCIGGLLSVVVQDLRIQLSFQSGSSRAEISAIYSANGRPTVCSSGSVRLGDLYAEEDRELLVELKLASSAVDFHRVISVRCLYKDPSTQEVVYGKEQGLLIPHLQSSRTSAPKAERLRNLFITTRAVAESRRSIEHDDYTSAHRLLSSARALLTQSSSISADEYIRALEAELAELQWRRQQIMTHRRRGSDRDTIGSLMEQNDEELTPTSAWRAAERLAKVAMMKKSLTSTVSDLHGFENARF 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20563237 20565542 - Bma001694.1 Bma01g01363 75880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01363 740 Gene3D von Willebrand factor, type A domain 337 518 IPR036465 -
Bma01g01363 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 169 IPR013083 -
Bma01g01363 740 SMART VWA_4 335 521 IPR002035 -
Bma01g01363 740 MobiDBLite consensus disorder prediction 445 465 - -
Bma01g01363 740 MobiDBLite consensus disorder prediction 43 63 - -
Bma01g01363 740 Pfam von Willebrand factor type A domain 337 462 IPR002035 -
Bma01g01363 740 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 740 - -
Bma01g01363 740 Pfam RING-like zinc finger 114 143 IPR001841 -
Bma01g01363 740 MobiDBLite consensus disorder prediction 446 465 - -
Bma01g01363 740 SUPERFAMILY vWA-like 335 512 IPR036465 -
Bma01g01363 740 ProSiteProfiles Zinc finger RING-type profile. 114 159 IPR001841 -
Bma01g01363 740 MobiDBLite consensus disorder prediction 1 63 - -
Bma01g01363 740 CDD RING-H2 114 159 - -
Bma01g01363 740 SUPERFAMILY RING/U-box 113 164 - -
Bma01g01363 740 ProSiteProfiles VWFA domain profile. 337 483 IPR002035 -
Bma01g01363 740 SMART ring_2 114 158 IPR001841 -
Bma01g01363 740 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 740 - -
Bma01g01363 740 CDD vWA_C3HC4_type 336 508 - -
Bma01g01363 740 Coils Coil 662 682 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01363 - - - cpap:110809457 887.486
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02574 Bma01g01363 CCT
Bma01g01363 Bma02g00100 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01363 Bma-Chr1:20563237 Bma15g01086 Bma-Chr15:43254845 0 dispersed
Bma14g00761 Bma-Chr14:8430557 Bma01g01363 Bma-Chr1:20563237 2.16E-07 dispersed
Bma01g01363 Bma-Chr1:20563237 Bma01g02574 Bma-Chr1:83348535 7.12E-174 wgd
Bma01g01363 Bma-Chr1:20563237 Bma02g00100 Bma-Chr2:886548 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01363 Bma_Chr01 FPKM 19.087149 20.451401 17.045727 18.951754 19.418213 19.528303 19.738747 22.076891 19.374739 20.656456