Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01364 ATGGCCGAGCGAAGACGACGAAAGCGACTGAATGACAGGCTGACTATGCTAAGATCCATTGTCCCTAAGATTAGCAAGGTAAACCATGAATCCGAACAGATGGACAGAACTGCTATACTTGGAGACGCCATTGATTACATGAAAGAACTGTCAGAGAAAATCAGCTACTTGAAACAAGAAATCGAAGTGGGTTCCGATCCATTTGACTCAGTGAGCCATTTTAAGGACGTCAAATTAAATGAATTCTTTGTTAGAACTTGCCCAAAGATGGAGGTGGAAGAAAGAAACGGCGAAACTCGGATTACGATTTGCTGCTCAGGAAAGCCTGGTTTATTATCATTAACAGTGAATATCCTCGACGCTTTAGGACTCGAGGTTAATGAGTGTGTGATTAGCTCCTTCAACAACTTCACAATGCATGCTTCTTGTTCGCAGGTAAATAAAAAAGAATCTCTTCTTTTCTGTTCAAGTTCTGGGTTTTGTTTTAATTGGGTGAAAACTGGAATTGAAGCAGGGTATAATGGCTGCTCCTGA 534 41.2 MAERRRRKRLNDRLTMLRSIVPKISKVNHESEQMDRTAILGDAIDYMKELSEKISYLKQEIEVGSDPFDSVSHFKDVKLNEFFVRTCPKMEVEERNGETRITICCSGKPGLLSLTVNILDALGLEVNECVISSFNNFTMHASCSQVNKKESLLFCSSSGFCFNWVKTGIEAGYNGCS 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20572559 20573206 - Bma001695.1 Bma01g01364 75881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01364 177 CDD ACT_UUR-ACR-like 99 139 - -
Bma01g01364 177 SMART finulus 1 56 IPR011598 GO:0046983
Bma01g01364 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 50 IPR011598 GO:0046983
Bma01g01364 177 PANTHER DNA BINDING PROTEIN 1 153 - -
Bma01g01364 177 Pfam Helix-loop-helix DNA-binding domain 2 50 IPR011598 GO:0046983
Bma01g01364 177 Gene3D - 1 64 IPR036638 GO:0046983
Bma01g01364 177 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 153 - -
Bma01g01364 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 65 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01364 - - - vra:106764382 180.259
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01364 Bma04g00423 CCT
Bma01g01364 Bma02g00102 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01364 Bma-Chr1:20572559 Bma15g01082 Bma-Chr15:43172903 6.72E-37 dispersed
Bma01g01364 Bma-Chr1:20572559 Bma02g00102 Bma-Chr2:926035 4.85E-55 wgd
Bma01g01364 Bma-Chr1:20572559 Bma04g00423 Bma-Chr4:3423204 1.91E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g559 Blo01g01790 Blo12g00741 . Bda03g00446 . . Bma04g00423 . Cmo05g00589 . Cma01g01461 Cma09g00606 . . . Cpe06g00467 . Bhi04g00904 . . . Hepe10g0404 . Lcy13g1454 Cla08g01184 Cam08g1649 Cec08g1223 Cco08g1344 Clacu08g1345 . Cre08g1131 . Cone9ag1430 . . Lsi04g02300 Csa03g04520 Chy04g00184 Cme03g01779 Blo17g00087 Blo18g00096 . . Bpe02g01167 Bpe14g00498 Bma01g01364 Bma02g00102 Sed05g1531 Cmo01g01513 Cmo09g00594 . Cma05g00563 Car05g00509 Car09g00538 Cpe11g00494 Cpe02g00490 Bhi09g02536 Tan01g3883 Cmetu04g1590 . Hepe01g2191 Mch11g0736 . Cla11g01450 Cam11g1503 Cec11g1540 Cco11g1535 Clacu11g1668 Cmu11g1484 Cre11g1904 Lsi08g01047 Csa02g02231 Chy03g01286 Cme04g00212
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001186 1 3 3 3 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 3 2 2 2 6 3 3 75
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56723 PF00010 HLH 1.60E-09 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01364 Bma_Chr01 FPKM 3.804294 3.461217 5.52408 5.280268 4.240468 5.732053 6.123782 2.144728 1.991339 1.513377