Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01366 ATGACGTTCCTCGTGAATGTTTATGCAAAATGCGGTAACATGGAATATGCCCGCAAAGTTTTCGACAATTTGCCGAGGAGAAATGTTGTTGCCTGGACAACCCTAATGACAGGATATGTTCACCAATTGCAGCCACAGATTGCAATTGAAGTTTTCCTCGAAATGTTAGATGCAGGGGCTTATCCAACAAACTACACTCTGGGAATTGTTCTAAACGCATGTACTTCCTCAAACTCCACTGAATTTGGGAGGCAAATTCATGCCTATATTATTAAATACCACCTTCATTTTGACACTAGTATTGGGAACTCTCTTTCAAGCTTTTACTCTAAAACTCGAAAGTTGAAATCTGCCATAAAATCGTTTAAGAGGATCCAAGAAAAGAATGTGATCTCTTGGACTGCAGTTATATCGGCTTGTGGGGAAAACGGGGCTGCAGAGCAAGGTCTGAGTTTTTTTGCAGAAATGTTGGCTCAAGGCATTGAACCTAATGAGTTCACCTTCACTAGTGTCTTGAGCTTGTGCTGTGTAACGCTGACATTGGCTTTAGGAGCTCAAATTCACTCATTAAGCCTAAAACTAGGCTACCAATCGAGCTTGCCTATAAGAAACTCTGTGATGTACTTGTACTTAAAATGTGGATGGATTCATGAGGCTTACAAGGTGTTTGAAGGAATGGAAGTTGTAAATTTAGTCACGTGGAATTCAATGATTGCGGGCTACGCAAAAATGATGGATTCTAACGATCTCTCGGCATACCAAAATGGAAATGAAGCCTTGAATATTTTCTTGAAATTGCATCGATCGAATATAAAGCCCGATTTGTTCACATTTTCTAGTGTTTTAACTGTGTGTAGTAGTTTGGTGGCCTTAGAACAAGGGGAACAAGTTCATGCTCAAACCATCAAGACCGGATTTCTGTCTGATGTTGTAGTGGGAACTGCACTTGTTAATATGTATAATAAATGTGGAAGCATCGAAAAAGCGTGTAGAGCTTTCCTCGAGATGTCCACTCGAACTTTAATATCGTGGACTTCGATGATAACTGGATTTTCACAGCACGGACGGTCTCAACAAGCCCTTCAGCTTTTCGAAGACATGTTACTTGCAGGGGTTAGGCCAAACCAGGTGACTTTTGTGGGTGTTTTATCGGCTTGTAGCCATGCCGGAATGGTAGAAGAAGCATTTGGGTATTTCAACCTGATGCAAAAGGAGTATAATATTAGACCTGTTATGGACCACTTTGCCTGCATGATCGATATGCTTGTGCGATTGGGTAGGCTGGATGAAGCTTTTGATTTCATAACGAAGATGGGTTTTGAGCCTAATGAGTGCATATGGAAGATCTTAGTTGCAGGCTGTAGAATTCAAGGGAATTTAGAACTTGGGTTTTATGCAGCTGAGCAGCTACTCAAGCTCAAGCCTAGAGATACCGAGACTTACGTCTCATTGCTGAACATGTACCTCTCGGCAGAGCGGTATACGGATGTTTCGAGAGTGAGAAAGCTGATGAAGGAACAGAAACTTGAGAAATTGAATGATTGGAGCTGGATTAGCATTAAAAACAAGGTTTATTCATTTAAACCCAACGATAAGTCCCATTATAACAGCAAGGAGATGTATGGACTATTAGAGAATTTACTTGAAGAAGTCAAGAATCTTGGGTATGAGTCTGTTGAGCGTCTGGAAGTAGTAGTAGAAGAAGAAGAAGCTGAAAACGAAGAAAAAGTTCTCGAATCCACTGTCCATCACAGCGAAAAGTTAGCCGTTGCTTTTGGGTTGTTGAAACTGCCAAATGCTGCGCAGATTCGGGTTATCAAGAGCACCACCATGTGTGGGGACTGCCATAGCTTTTTAAGGTTTGTTTCTGTATTGACTGCCAGAGAAATCATTATCAGAGATGGTAAGAGGCTTCATCAATTTGTCAATGGACAGTGTTCTTGTGGAGATAGCAATTTTGCTTGA 1965 41.17 MTFLVNVYAKCGNMEYARKVFDNLPRRNVVAWTTLMTGYVHQLQPQIAIEVFLEMLDAGAYPTNYTLGIVLNACTSSNSTEFGRQIHAYIIKYHLHFDTSIGNSLSSFYSKTRKLKSAIKSFKRIQEKNVISWTAVISACGENGAAEQGLSFFAEMLAQGIEPNEFTFTSVLSLCCVTLTLALGAQIHSLSLKLGYQSSLPIRNSVMYLYLKCGWIHEAYKVFEGMEVVNLVTWNSMIAGYAKMMDSNDLSAYQNGNEALNIFLKLHRSNIKPDLFTFSSVLTVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIEKACRAFLEMSTRTLISWTSMITGFSQHGRSQQALQLFEDMLLAGVRPNQVTFVGVLSACSHAGMVEEAFGYFNLMQKEYNIRPVMDHFACMIDMLVRLGRLDEAFDFITKMGFEPNECIWKILVAGCRIQGNLELGFYAAEQLLKLKPRDTETYVSLLNMYLSAERYTDVSRVRKLMKEQKLEKLNDWSWISIKNKVYSFKPNDKSHYNSKEMYGLLENLLEEVKNLGYESVERLEVVVEEEEAENEEKVLESTVHHSEKLAVAFGLLKLPNAAQIRVIKSTTMCGDCHSFLRFVSVLTAREIIIRDGKRLHQFVNGQCSCGDSNFA 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20641588 20643552 - Bma001698.1 Bma01g01366 75883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01366 654 Pfam E motif 459 518 IPR046848 -
Bma01g01366 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Bma01g01366 654 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 1 587 - -
Bma01g01366 654 Pfam PPR repeat family 342 387 IPR002885 -
Bma01g01366 654 Pfam PPR repeat family 27 74 IPR002885 -
Bma01g01366 654 Pfam PPR repeat family 128 176 IPR002885 -
Bma01g01366 654 Pfam PPR repeat 232 245 IPR002885 -
Bma01g01366 654 Pfam PPR repeat 314 337 IPR002885 -
Bma01g01366 654 Pfam PPR repeat 204 227 IPR002885 -
Bma01g01366 654 Pfam PPR repeat 417 438 IPR002885 -
Bma01g01366 654 Gene3D Tetratricopeptide repeat domain 1 78 IPR011990 GO:0005515
Bma01g01366 654 Gene3D Tetratricopeptide repeat domain 294 385 IPR011990 GO:0005515
Bma01g01366 654 Gene3D Tetratricopeptide repeat domain 386 540 IPR011990 GO:0005515
Bma01g01366 654 Gene3D Tetratricopeptide repeat domain 79 184 IPR011990 GO:0005515
Bma01g01366 654 Gene3D Tetratricopeptide repeat domain 186 293 IPR011990 GO:0005515
Bma01g01366 654 TIGRFAM PPR: pentatricopeptide repeat domain 131 165 IPR002885 -
Bma01g01366 654 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Bma01g01366 654 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Bma01g01366 654 TIGRFAM PPR: pentatricopeptide repeat domain 30 63 IPR002885 -
Bma01g01366 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Bma01g01366 654 Pfam DYW family of nucleic acid deaminases 564 651 IPR032867 GO:0008270
Bma01g01366 654 Coils Coil 559 579 - -
Bma01g01366 654 PANTHER OS01G0913400 PROTEIN-RELATED 1 587 - -
Bma01g01366 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01366 - - - zju:107427123 973.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01366 Bma-Chr1:20641588 Bma07g00390 Bma-Chr7:4772840 6.41E-17 dispersed
Bma01g01366 Bma-Chr1:20641588 Bma02g01043 Bma-Chr2:51951043 1.40E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01366 Bma_Chr01 FPKM 0.0 0.0 0.0 0.0 0.955325 1.262443 0.0 0.0 0.0 0.0