Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01367 ATGGCAGACATTATAGAGCTTGAGAAAGCTCGTCAATGGAAGGGACTTGAGCTCATACCTTCAGAGAATTTTACCTCATTGTCAGTGATGCAAGCTGTTGGGTCAGTGATGACTAATAAATACAGTGAAGGATATCCAGGAGCCAGATACTATGGCGGAAATGAGTATATTGATATGGCAGAGTCTTTATGTCAGAAGCGGGCATTAGAAGCATTTCGGTTGGACCCTGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGTTCCCCTGCAAACTTCCAAGCATATACTGGACTGTTAAAACCTCATGAGAGGATTATGGCTCTTGATTTGCCACATGGTGGACATCTTTCGCATGGTTATCAGACAGATACCAAGAAGATATCTGCTGTGTCAATATTCTTCGAGACCATGCCGTATAGGTTGGATGAGACCACAGGTTACATTGACTATGACCAGTTGGAAAAAAGTGCTACCCTTTTCCGACCAAAACTCATTGTTGCTGGTGCTAGTGCTTATGCTCGTCTTTATGACTATGGGTGCATCCGCAAGGTATGTGACAAGCAGAAAGCTATTATGTTGGCTGATATGGCTCATATTAGTGGTTTGGTTGCTGCGGGTGTTATTCCATCTCCTTTCGAATATGCTGATATAGTGACTACAACAACACACAAGTCACTACGAGGCCCGCGTGGAGCTATGATTTTTTATAGGAAGGGAGTGAAGGAGATTAACAAGCAAGGGCAAGAAGTGTTTTATGACTATGAAGACAAAATTAATCAAGCTGTGTTTCCTGGACTTCAAGGTGGTCCACACAACCACACTATAGCTGGTTTGGCAGTCGCACTGAAACAGGCAACCACTCCGGAGTACAAAGCCTACCAAGAGAAAGTTCTTCATAATTCCTCAAAATATGCTCAGAGTTTAATTGAGATGGGCTATGATCTTGTATCTGGTGGAACCGATAACCATTTGGTTCTGGTGAATTTGAAAAACAAGGGTATTGATGGCTCAAGAGTTGAAAAGGTTCTTGAGGCAGTTCATATAGCGGCCAATAAAAACACTGTTCCAGGCGATGTATCTGCTATGGTTCCGGGTGGCATCCGTATGGGGACCCCTGCTCTCACTTCAAGAGGATTTATTGAGGAAGATTTTGTTAAAGTAGCCGAATTCTTTGATGCAGCTGTGAAGTTGGCCTTGAAGATCAAGGGACTTACCAAAGGTACTAAATTAAAGGATTTCGTGGGAACTATGCAATCAGACACAAGCATTCAAACAGAAATTGAAAAGCTCCGGTGTGACGTCGAGGAGTACGCCAAACAATTTCCAACTATAGGTTTCGAGAAAGAGACGATGAAATATAAAGACTGA 1371 42.74 MADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQAYTGLLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDETTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYGCIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYRKGVKEINKQGQEVFYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQATTPEYKAYQEKVLHNSSKYAQSLIEMGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFVKVAEFFDAAVKLALKIKGLTKGTKLKDFVGTMQSDTSIQTEIEKLRCDVEEYAKQFPTIGFEKETMKYKD 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20645218 20649085 - Bma001699.1 Bma01g01367 75884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01367 456 CDD SHMT 1 403 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma01g01367 456 Gene3D - 23 296 IPR015421 GO:0003824
Bma01g01367 456 SUPERFAMILY PLP-dependent transferases 2 447 IPR015424 -
Bma01g01367 456 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 217 233 IPR019798 GO:0030170
Bma01g01367 456 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 1 455 - -
Bma01g01367 456 Pfam Serine hydroxymethyltransferase 1 391 IPR039429 -
Bma01g01367 456 Hamap Serine hydroxymethyltransferase [glyA]. 1 446 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma01g01367 456 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 455 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma01g01367 456 PIRSF SHMT 1 451 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bma01g01367 456 Gene3D Aspartate Aminotransferase, domain 1 1 443 IPR015422 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01367 K00600 glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1] - qsu:111997596 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01367 Bma-Chr1:20645218 Bma10g00629 Bma-Chr10:8672419 0 dispersed
Bma01g01367 Bma-Chr1:20645218 Bma05g01299 Bma-Chr5:52312388 5.37E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g553 Blo01g01790 . . . . . . . . . . . . . Sed07g1476 . . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . . . . . . . Cme03g01782 . Blo18g00098 . . . . Bma01g01367 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01041 Csa02g02227 Chy03g01290 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g01367 Bma_Chr01 FPKM 0.26819 0.186626 0.0 0.0 1.084545 1.693192 0.0 0.0 0.0 0.172356